PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000246.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 323aa MW: 37720.7 Da PI: 6.5418 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.6e-12 | 8 | 64 | 33 | 91 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 s++++l++++ ++W++++ +k +++++++ GW +Fv++n +gD + F++d+ f Itr_sc000246.1_g00019.1 8 SRKVILRNRKQKVWNIEI--TKIGDACFFKYGWAKFVEDNSFIDGDQLFFMYDHPAVFD 64 679***************..*******************************99865554 PP | |||||||
2 | B3 | 35.2 | 2.3e-11 | 228 | 312 | 12 | 97 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 +++ l++p + ++++++k + +++l de++++W+ +++++ + r++l++GW++ +k n ++e+D ++ +++ + e l+v+ Itr_sc000246.1_g00019.1 228 RRDDLYIPVELVRDYNIK--LPAKVILCDERNQKWDAYIKMWSDG-RTWLSGGWRKLCKWNLVQEKDRCICEFVPSlgPELVLKVT 310 5678***********888..8889***************988875.789********************99977432355555555 PP EE CS B3 96 vf 97 ++ Itr_sc000246.1_g00019.1 311 II 312 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.885 | 1 | 71 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.53E-6 | 3 | 58 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-11 | 8 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-12 | 8 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.0E-9 | 8 | 61 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-18 | 214 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-19 | 214 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.082 | 217 | 315 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-10 | 218 | 313 | No hit | No description |
SMART | SM01019 | 1.8E-9 | 220 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-9 | 228 | 312 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEPERRYSRK VILRNRKQKV WNIEITKIGD ACFFKYGWAK FVEDNSFIDG DQLFFMYDHP 60 AVFDFFVTDP FGHEKIIMEG KEAQVEGSKD NTFLVEFEFN MVTQVKKEED EMDAEEENND 120 AGFQYHTRTQ GKRCISELER ATNVTEREAN SNKGNVGAGE NDARAKKMGV SEEENDASAI 180 KVGVSEEKKD ASVKRRDVPD HYGLKLFNSG RFTQPKNPYF VTKIRPKRRD DLYIPVELVR 240 DYNIKLPAKV ILCDERNQKW DAYIKMWSDG RTWLSGGWRK LCKWNLVQEK DRCICEFVPS 300 LGPELVLKVT IIRRKDLEEA QPN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166019.1 | 1e-179 | PREDICTED: putative B3 domain-containing protein At5g66980 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60140.1 | 6e-10 | B3 family protein |