PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000237.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24381.2 Da PI: 10.2706 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3e-14 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s+r++++ +R+ g+lKK +EL +LC++++a+i++ Itr_sc000237.1_g00021.1 11 IVNESKRKTSYRNRKDGMLKKLNELTILCGVDAAIIMYN 49 789**********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.231 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.20E-19 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-18 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-13 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MARRRLRLAY IVNESKRKTS YRNRKDGMLK KLNELTILCG VDAAIIMYNS FESGPVIWPS 60 AGEVLQRIAG FLNLPYVEQT QRMMSHESFV EQRIHKLNTK LLNVKKENRE REMNALMHKI 120 FIGERTIDSL SFIDLNDLGW ILNSNLAKID NKAEEIVRHS STLASSTLAL AQTLAAFLPG 180 AHSFTTASPF VVGPGTSNVV APADVLSRYQ GTGMQTGK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186570.1 | 7e-91 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A328DST7 | 2e-45 | A0A328DST7_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-32 | AGAMOUS-like 80 |