PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000234.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 360aa MW: 40435.1 Da PI: 8.7248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000234.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	9.7e-07	230	271	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++ +++ L++l+P++ +K++ a +Le+A +Y+k Lq Itr_sc000234.1_g00006.1 230 ARERRQKQCEKIRYLQKLMPWD-----TKMDTARMLEEAYKYVKFLQ 271 599****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.04E-5	209	275	No hit	No description
PROSITE profile	PS50888	11.007	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-10	227	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-4	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-8	230	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-4	230	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSSSLFCGED QAFAVDDEAY IINGMNDKLS FRALLSLCLN HEEQTALLHL LPPQLISTAA 60 TSNFNCLPYD VYPPMPLPLP ENVAFGSLTA FPPTSIRSLQ CGGGDLELKF SKMPRQEFST 120 HQFGSYGYGY GYGYGYNNNN SAAISTEPSN FFADVSCDYG FRHLPDLRSL EKQQQPLPLN 180 TDFGFRPPRN TGGYILEKST GNYQPPPTRR QPHREPRKAG KTESRSCKLA RERRQKQCEK 240 IRYLQKLMPW DTKMDTARML EEAYKYVKFL QAQVRVLQNM PARGALPSPN TTPSLHGPIA 300 SLSRQQLLEV LVNSPAAQTF LYSRGCCVYS VEQLALLGKV VDRKTLFEQM LIASASMLRS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSSSLFCGED QAFAVDDEAY IINGMNDKLS FRALLSLCLN HEEQTALLHL LPPQLISTAA  60
TSNFNCLPYD VYPPMPLPLP ENVAFGSLTA FPPTSIRSLQ CGGGDLELKF SKMPRQEFST  120
HQFGSYGYGY GYGYGYNNNN SAAISTEPSN FFADVSCDYG FRHLPDLRSL EKQQQPLPLN  180
TDFGFRPPRN TGGYILEKST GNYQPPPTRR QPHREPRKAG KTESRSCKLA RERRQKQCEK  240
IRYLQKLMPW DTKMDTARML EEAYKYVKFL QAQVRVLQNM PARGALPSPN TTPSLHGPIA  300
SLSRQQLLEV LVNSPAAQTF LYSRGCCVYS VEQLALLGKV VDRKTLFEQM LIASASMLRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167702.1	0.0	PREDICTED: uncharacterized protein LOC109163414
TrEMBL	A0A328DXC1	6e-47	A0A328DXC1_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	8e-25	bHLH family protein