PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000227.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 521aa    MW: 58768 Da    PI: 6.2376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000227.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.8e-21163253199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k l++s+v++  ++ lp +f++++ +   +++t+++e+esg+++e+k+i +k++    l++GW++Fv a++L egD+++F+l+g
  Itr_sc000227.1_g00005.1 163 FLKLLVRSHVGSCFWMGLPVPFCKKYLSR--KDTTVVVENESGEEFEIKYIAEKTG----LSAGWRKFVAAHKLVEGDVLIFQLTG 242
                              89************************655..6779***************777777....************************99 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               ++f  +v v+r+
  Itr_sc000227.1_g00005.1 243 PDRF--KVYVIRT 253
                              8888..8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-21155254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-22158254IPR015300DNA-binding pseudobarrel domain
CDDcd100178.22E-25161252No hitNo description
PROSITE profilePS5086314.057163254IPR003340B3 DNA binding domain
PfamPF023623.2E-18163252IPR003340B3 DNA binding domain
SMARTSM010192.5E-22163254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MKIKVVLNQE NRGDPEMPKK EIVEDEGAKR EWPEPEEDET REPNEENLSL VNIPNSSASP  60
LNSYPQNLGK RKRKPKEMID EISPLVLSRK RKKKLQPSAA QSSHGKLNLY RSSPCDPSWQ  120
RTDVNQEGPG GMGKSPSTLQ VKSPTLIRAE EVQSSLGQEY PTFLKLLVRS HVGSCFWMGL  180
PVPFCKKYLS RKDTTVVVEN ESGEEFEIKY IAEKTGLSAG WRKFVAAHKL VEGDVLIFQL  240
TGPDRFKVYV IRTNDLTDVD GALSLLNLEV LTKQSDAAAE ATNPNNKRKK RQKSLPLTVV  300
QKKKHKAQQL VQLEEQSGND SDEVASEVFE GSKSLSLAVS FGDIKSFEDF TIVVNGVCLD  360
SEIPEHIRRK YYELCCSKNA FLHDRLLTGL YGQLIAGMIF EVVSIADALR ACKLTTARTE  420
FEVWDKSLKS FELLGMNVGF LRDRVRHLLD LAFESEGASD AKRYWEAKTG MARTEEEIKT  480
IEIKLVELKE ASKVYSADVE ALRSKAESFE IMFDEEINAP W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17193KRKPKEMIDEISPLVLSRKRKKK
28892RKRKK
3286303KRKKRQKSLPLTVVQKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185515.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLM1BAE90.0M1BAE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-36B3 family protein