PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000226.1_g00036.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 572aa    MW: 62649.5 Da    PI: 5.4422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000226.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000556386123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                             ++C  C+k+Fs+   L  H+++ H
  Itr_sc000226.1_g00036.1 63 HVCLECNKRFSSGKALGGHMSSaH 86
                             79******************9988 PP
2zf-C2H210.80.0016140159221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +Cp+C k F+++ +L  H+r
  Itr_sc000226.1_g00036.1 140 RCPHCFKKFPSRKSLFGHMR 159
                              7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0586391IPR007087Zinc finger, C2H2
PfamPF139122.9E-86386IPR007087Zinc finger, C2H2
SMARTSM003550.216386IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806586IPR007087Zinc finger, C2H2
SMARTSM003550.011139161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265139161IPR007087Zinc finger, C2H2
PfamPF139124.5E-5140163IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-8140161No hitNo description
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-8339366No hitNo description
PfamPF139121.3E-6344367IPR007087Zinc finger, C2H2
SMARTSM003550.18344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596344371IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576677.75E-5419445No hitNo description
PfamPF139123.7E-9420442IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492420447IPR007087Zinc finger, C2H2
SMARTSM003550.063420442IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280422442IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MENHQQNPKK RDREEEDDGF SRKKDFPPPP PAAAGEGNLK VKLRIGKSPP AAGEEESPEK  60
KDHVCLECNK RFSSGKALGG HMSSAHVQAN RDYSYKKKKQ VVRGGAGGSS KGSDEDGGGE  120
EEDEEEGRRE YYRGKDGEIR CPHCFKKFPS RKSLFGHMRC HPDRYWRGME PPPIPGSSTN  180
KSEDKNEEED EDKVSPERVD LQGYLSSWGS KAKRGRSPIK QRSSSTSISD DEELQEAVHH  240
LVCLGNAQNP NPEINKNNHM IGKGKEKLID EEDGLDNHSE DSEDDEDNGI TKWINPKNID  300
CPNPNGNASA AALSNDNNKK RRIIVENTMR PLMESEMEST KELFKCSTCN KCFSSHQALG  360
GHRSSHNKFR LSVQNTIDDE QTNTASAPAT ILVPSPVQNP QTVANTNENI NDVPNATSKY  420
QCGVCNKVFA TGKALGGHKK CHSVSQSTLL QPAPPPSSPE RSSTPPDDDA TGKAFEGHKK  480
CDSVSQSTLL QPAPPPSSPG RSSTPPDDDA TGKALGGHKE CHSVSQSTLL QPAPLNSPER  540
SSTPPPPDDD DDVDEPKRLD FDLNEIPDED DE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199058.11e-169PREDICTED: uncharacterized protein LOC109192806
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-16C2H2 family protein