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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000223.1_g00036.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | LBD | ||||||||
| Protein Properties | Length: 110aa MW: 11929.4 Da PI: 7.2713 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 42.6 | 1.7e-13 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e
Itr_sc000223.1_g00036.1 1 MVYEANARVRDPVYGCVGAISSLQQQIDMLQTQLAIAQAE 40
69*********************************99976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 9.674 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 4.9E-11 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 110 aa Download sequence Send to blast |
MVYEANARVR DPVYGCVGAI SSLQQQIDML QTQLAIAQAE VVHMRMRHSV SSASAAAGGN 60 SPENMAASPP TPASRQAPPP YHHHHQTRSH FSMDMVMDQA TWGNSHCGYA |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019155334.1 | 6e-51 | PREDICTED: LOB domain-containing protein 4-like | ||||
| TrEMBL | A0A484K2K5 | 4e-35 | A0A484K2K5_9ASTE; Uncharacterized protein | ||||
| STRING | Solyc11g045530.1.1 | 5e-34 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA43 | 24 | 669 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G16530.1 | 1e-20 | ASYMMETRIC LEAVES 2-like 9 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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