PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000219.1_g00054.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 384aa    MW: 43991.4 Da    PI: 6.8558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000219.1_g00054.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144767323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C+ C+k Fs+   L  H+r H
  Itr_sc000219.1_g00054.1 47 CHVCNKGFSSGKALGGHMRIH 67
                             *******************99 PP
2zf-C2H215.35.8e-05122143223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              +C +Cgk F +  +L  H+r+H
  Itr_sc000219.1_g00054.1 122 VCLICGKDFQSMKSLYGHMRSH 143
                              6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3494567IPR007087Zinc finger, C2H2
PfamPF139122.0E-84567IPR007087Zinc finger, C2H2
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.45E-54668No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.0014767IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.18121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64121148IPR007087Zinc finger, C2H2
SuperFamilySSF576679.99E-9122143No hitNo description
PfamPF139123.9E-5123144IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576679.99E-9300327No hitNo description
PROSITE profilePS5015710.097305327IPR007087Zinc finger, C2H2
PfamPF139128.1E-8305328IPR007087Zinc finger, C2H2
SMARTSM003550.014305327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVEELEDQLS IKLKNVPREE EEEEEEEEEG YGVFYGESEK KKITRICHVC NKGFSSGKAL  60
GGHMRIHGQL YKKRKEDAAF QVEEEEEDEE EYEYEYCYDD NEEERMKKKK RFMKKMKMVV  120
PVCLICGKDF QSMKSLYGHM RSHPRDWKGI HPPAAAENPV VDLKKALKCR WSVTAKRGRK  180
VISGGGGDQT SSLSEDTEEE QLRDAAHELM MLAHGGESRR HDQELDSKSL SYEVMTKNVR  240
GKAKAPENQE SKKKSISGYR ETRADEKTRK KRMKLIKLKD LESVHHNATA SIDHDNRTPA  300
AAEKYKCSEC DKWFRTHQAL GGHKSSHNKL CKMVIQNSID DDPLMPTNQV TNSPGELSHT  360
AGGSSHHHHQ ILGFDLNEVP QTTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109ERMKKKK
2251271KKKSISGYRETRADEKTRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183206.11e-170PREDICTED: uncharacterized protein LOC109178118 isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-14C2H2 family protein