PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000216.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 223aa MW: 24123.8 Da PI: 9.0557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000216.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Itr_sc000216.1_g00012.1 88 FECQYCFKEFANSQALGGHQNAH 110 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.06E-7	84	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-6	84	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.406	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSKDISTSLS SSPCKNGDNE SRPPAKKLKL FGFDLAGETK TDVSKEDHDS ANSSSSSTTV 60 VSSAASGDKP AAVCGGSVAG AGAGERKFEC QYCFKEFANS QALGGHQNAH KKERMRKKRL 120 QIQARKASLS CYYLQQHPFL QNNNSSPSWL FDPSSANSSD QLPPFEGSQI SFGSQEPFLP 180 DSSAMFFTLS TNNPRKISKN HHSNKTCKSL DLQLGLSLLH STH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170614.1	4e-91	PREDICTED: zinc finger protein 5-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	7e-16	zinc finger protein 5