PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000215.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 735aa MW: 77152.8 Da PI: 7.6179

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000215.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.2e-08	253	297	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I + Rt+ q+ rw Itr_sc000215.1_g00014.1 253 RKPWSEAEDLELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 297 789************************984222488888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.164	248	305	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-13	248	300	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.6E-12	249	303	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-9	252	303	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-7	253	297	IPR001005	SANT/Myb domain
CDD	cd11660	1.14E-13	254	302	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MVEKSGKRKK CSVSEEDIST LLQRYNATTV LALLREVAQV TEVKIDWNEL VKKTSTGITN 60 VREYQMLWRH LAYRHGLADR LDDTALPLKA YLESVDKIFA LVSLLLLHPI TILTLSGSAI 120 HPLGCCISSP TVLFFDKSDD DSDLEYELEA SPAVSSEASA EAAACVKVFI ASGVPNDSYL 180 SNGTIVEAPL TINIPTGQTC RNPSDNCYQS ISHGTNITVP VFVQKQPLPN VTSAEGLDNN 240 GASNATLPPR RKRKPWSEAE DLELIAAVQK CGEGNWANIL KGDFKGDRTA SQLSQRWAII 300 RKRQGTLVGN SSQPTEAQLA ARRAMSLALD MPMGDNLKAV CSINTGANTN ISPGNPANPP 360 AAETSFAGTQ SQNHLGQQQD SAMAAQKPGT LGPSKARVPP KKPPTKSTLS PDSMVKAAAV 420 AAGARIATPS DAASLLKAAQ SMNAVRIMPG GGGPMVKPPA VGANTLPSNV HFIRTGLLSH 480 SKTLPNATRT GPQPVQGHSA KPASQVVQSN LASTTIPGPK ASNEVPNGTN STLAAELDVK 540 TVEDAVISGP KALAEVPNGT NSTSVSKVPN GTNSTPASEL DTKTAKDSVI SGSGGLGTVM 600 EKPAKESRAP GPCNSPEGNK AVPTKEAPLE LAQMDQTAIP AKEKIEETCF SGDAPKENGQ 660 RDQASVSTAR AATICVQEKQ INSSSTTNVT TAKCSANDRN QAEVECASSN DNSAIVSPVG 720 NTGKEMNEKQ PTNRE

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MVEKSGKRKK CSVSEEDIST LLQRYNATTV LALLREVAQV TEVKIDWNEL VKKTSTGITN  60
VREYQMLWRH LAYRHGLADR LDDTALPLKA YLESVDKIFA LVSLLLLHPI TILTLSGSAI  120
HPLGCCISSP TVLFFDKSDD DSDLEYELEA SPAVSSEASA EAAACVKVFI ASGVPNDSYL  180
SNGTIVEAPL TINIPTGQTC RNPSDNCYQS ISHGTNITVP VFVQKQPLPN VTSAEGLDNN  240
GASNATLPPR RKRKPWSEAE DLELIAAVQK CGEGNWANIL KGDFKGDRTA SQLSQRWAII  300
RKRQGTLVGN SSQPTEAQLA ARRAMSLALD MPMGDNLKAV CSINTGANTN ISPGNPANPP  360
AAETSFAGTQ SQNHLGQQQD SAMAAQKPGT LGPSKARVPP KKPPTKSTLS PDSMVKAAAV  420
AAGARIATPS DAASLLKAAQ SMNAVRIMPG GGGPMVKPPA VGANTLPSNV HFIRTGLLSH  480
SKTLPNATRT GPQPVQGHSA KPASQVVQSN LASTTIPGPK ASNEVPNGTN STLAAELDVK  540
TVEDAVISGP KALAEVPNGT NSTSVSKVPN GTNSTPASEL DTKTAKDSVI SGSGGLGTVM  600
EKPAKESRAP GPCNSPEGNK AVPTKEAPLE LAQMDQTAIP AKEKIEETCF SGDAPKENGQ  660
RDQASVSTAR AATICVQEKQ INSSSTTNVT TAKCSANDRN QAEVECASSN DNSAIVSPVG  720
NTGKEMNEKQ PTNRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	254	PRRKRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175330.1	0.0	PREDICTED: uncharacterized protein LOC109170597 isoform X3
TrEMBL	A0A484LDP8	0.0	A0A484LDP8_9ASTE; Uncharacterized protein
STRING	XP_009597578.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-42	MYB_related family protein