PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000211.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 709aa    MW: 76543.5 Da    PI: 6.2326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000211.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07309329526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ G C++Gd C +aHg
  Itr_sc000211.1_g00017.1 309 PCPDFRK-GACRRGDMCEYAHG 329
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002049.04E-1233162No hitNo description
SuperFamilySSF484031.55E-1437163IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-972151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1682183IPR020683Ankyrin repeat-containing domain
SMARTSM002480.4884114IPR002110Ankyrin repeat
PROSITE profilePS5029715.45984159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0071119151IPR002110Ankyrin repeat
PROSITE profilePS5008811.06119154IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4308331IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
SMARTSM0035644339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MCSGPEQSNS DSATNQSSSD TKSSMKDMGK NSIETDDCFS SLLELAANND VDAFKRSIEC  60
DSCGVDSVGL WLVRKKGSKQ VVNEERSPLM VAATYGSVDV LRLILAQPEV DVNRACGPDK  120
YTALHCATSG GSVNAVEVVK LLLSAGADPI VEDVNGQRPA DVIAVPPKLP GGRASLEELL  180
LNNTSDGSVG ECNLRVSVTT SNASSPILSS SPDNGSPCSP SDLVSYPRES KFCDVPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGVA CARRVCFFAH  360
TPEELRPLYV STGSAVPSPR SAAATASVMD MAAALSLLPG SPSSHSVMSP SFNQPMSPTA  420
NGMSHSPAAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PEDLNMLQDF DAQQLILNDL  480
ACFSQSQLFS NEVTSSPRYS DQTAASGVFS PSHKSAVFNQ LQQQQRMLSP INTSVFSPKN  540
VEHHLLQAPF SVSSPGRMSP RSVDPISPMS GRLSPFAQSE KQHQQLRSFS SRDLGSNNPS  600
IVGSPSAAGN SWSNLGSLNS NIDWSVNGDK LRHHPGRSSE QLNHNGEGPD LSWVQSLVKE  660
SPPEMMKDKL AAPISGTAAT PSGSQIDSMD PHSVLGAWLE QMQLDQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186545.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1U7Y9180.0A0A1U7Y918_NICSY; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]