PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000209.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 279aa    MW: 31595 Da    PI: 10.2331
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000209.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.89.1e-39822043133
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 
                              +kkdrh ki T++g+RdRRvRls+ +a++fFdLqd LGfdk+skt++WL+ q+k ai el  t+   + +       +s++    +
  Itr_sc000209.1_g00023.1  82 KKKDRHTKILTAQGPRDRRVRLSICIARKFFDLQDTLGFDKPSKTLNWLFSQSKLAIEELFHTKMGVEGQI-----TVSED----S 158
                              69*************************************************************77777333.....22222....1 PP

                      TCP  89 kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                              +++ + ++++++++    + nla+ +srakar+rar rt +km  k
  Itr_sc000209.1_g00023.1 159 QEMGTRPNEEEEEETIGVFTNLANkHSRAKARERARARTINKMWFK 204
                              1222333445555555556788777*****************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-3382159IPR005333Transcription factor, TCP
PROSITE profilePS5136932.37583141IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.394183200IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MFSSTDANPL HPQFPVTSTT FHGGTTHQTL LPQLQNHYLY PHHLFQNTHM LLSSNNNNVV  60
NNKPLNSYVF PSNCRRRTTT GKKKDRHTKI LTAQGPRDRR VRLSICIARK FFDLQDTLGF  120
DKPSKTLNWL FSQSKLAIEE LFHTKMGVEG QITVSEDSQE MGTRPNEEEE EETIGVFTNL  180
ANKHSRAKAR ERARARTINK MWFKELSEAK MLLSSPLIKV PLHENELTTK ESIAPRICSV  240
WDIPKHLMMP KGLGVGHSNA SSSQENPGAA LITTIKPNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176343.11e-119PREDICTED: transcription factor CYCLOIDEA-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-21TCP domain protein 12