PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000200.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 25853.3 Da PI: 8.6189 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.9e-19 | 67 | 121 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k Itr_sc000200.1_g00008.1 67 RKKLRLTKEQSLLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSK 121 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.2 | 8e-37 | 67 | 155 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+keq+ lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++evee Itr_sc000200.1_g00008.1 67 RKKLRLTKEQSLLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 152 69************************************************************************************ PP HD-ZIP_I/II 87 Lre 89 Lr+ Itr_sc000200.1_g00008.1 153 LRA 155 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 48 | 121 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.55E-19 | 52 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-17 | 65 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.80E-16 | 66 | 124 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 67 | 121 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-20 | 123 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.4E-10 | 123 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAEMPGSSTC LDLTISIPGS SSSSSGGECG MRDLDINQVP SGENIEGESM MEEEDDQSSI 60 NGGAHPRKKL RLTKEQSLLL EESFRQNHTL NPKQKEVLAM QLRLKPRQVE VWFQNRRARS 120 KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAKKVGP PTVLTPHSRE PLPASTLTMC 180 PRCERVTTTT ITSTTVRAVE KGGPTTTSQG GNPNLSAKTL QLLHPRHPSA AC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160133.1 | 1e-133 | PREDICTED: homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 6e-81 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 6e-81 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A068TXK6 | 1e-100 | A0A068TXK6_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0011g04870.t01 | 1e-100 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-69 | homeobox-leucine zipper protein 17 |