PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000189.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 242aa MW: 27298.8 Da PI: 9.5498

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000189.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d++k++PwdLp e+e yfFs+r+ ky++g+r++rat sgyWkat Itr_sc000189.1_g00014.1 14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPDFDVCKSDPWDLPGD---WEQERYFFSTREVKYPNGNRSSRATGSGYWKAT 95 79**************************.89***********44...46799************************ PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++ s +++lvg+kktLvfykg+ap+g++tdW+mheyrl Itr_sc000189.1_g00014.1 96 GIDKQIASCrGRQLVGMKKTLVFYKGKAPHGSRTDWIMHEYRL 138 **99757778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-61	5	162	IPR003441	NAC domain
PROSITE profile	PS51005	57.892	14	162	IPR003441	NAC domain
Pfam	PF02365	5.8E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEKMSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPDFD VCKSDPWDLP 60 GDWEQERYFF STREVKYPNG NRSSRATGSG YWKATGIDKQ IASCRGRQLV GMKKTLVFYK 120 GKAPHGSRTD WIMHEYRLAN APTSQHPPNN NQNWVLCRVF LKKRPGKKED EETEMRGAAS 180 LGNGTKPVFY DFLARERADL NLAPASSSSG SSGVTVLSSN HQTEDHEESS SCSSFTTLRT 240 KP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	12	168	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-51	12	168	18	174	NAC domain-containing protein 19
3swm_B	8e-51	12	168	18	174	NAC domain-containing protein 19
3swm_C	8e-51	12	168	18	174	NAC domain-containing protein 19
3swm_D	8e-51	12	168	18	174	NAC domain-containing protein 19
3swp_A	8e-51	12	168	18	174	NAC domain-containing protein 19
3swp_B	8e-51	12	168	18	174	NAC domain-containing protein 19
3swp_C	8e-51	12	168	18	174	NAC domain-containing protein 19
3swp_D	8e-51	12	168	18	174	NAC domain-containing protein 19
4dul_A	8e-51	12	168	15	171	NAC domain-containing protein 19
4dul_B	8e-51	12	168	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199829.1	1e-166	PREDICTED: NAC domain-containing protein 83 isoform X4
Swissprot	Q9FY93	1e-104	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A482ETG6	1e-125	A0A482ETG6_IPOBA; NAC14
STRING	cassava4.1_014491m	1e-122	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-105	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]