PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000189.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 254aa MW: 27034.2 Da PI: 10.2441 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.9 | 1.8e-38 | 42 | 129 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tgt++++as+ a++ s+s++ s Itr_sc000189.1_g00008.1 42 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGTGTIPASALaAAAEASVSEQGTS 127 789******************************************************************88873333333333333 PP TCP 87 sg 88 + Itr_sc000189.1_g00008.1 128 VS 129 32 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-32 | 47 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.791 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAGNKPAEIK DLQILSSHNT KDQPQPQPQP QPQENNKKLQ VAPKRSSNKD RHKKVDGRGR 60 RIRMPALCAA RIFQLTRELG HKTDGETVQW LLQQAEPAII AATGTGTIPA SALAAAAEAS 120 VSEQGTSVSA SLHEFAGIRS HWAVMGGANN LSRPQISSAA AAAWPSVPGF APGFSGNQIL 180 NSIPKFGFHG FEFPNPGTFT QHLPGLELGL SQEGRIGSVN FQAVPQSYQM GTGNNPMNQQ 240 HPGTGRDESQ GPGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199844.1 | 1e-144 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 7e-61 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A068UY75 | 1e-89 | A0A068UY75_COFCA; Uncharacterized protein | ||||
STRING | EOX99738 | 4e-80 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-59 | TCP family protein |