PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000185.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23366.4 Da PI: 9.9699 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.2 | 9.6e-21 | 7 | 129 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 p G+rF+Ptd el+ +L+ v g+ ++ i e ++y+ ePw+L ++ee+ yf +k +kk+++++r +r++ +g+W Itr_sc000185.1_g00020.1 7 PSGYRFRPTDIELL-GFLALFVLGSLpFSW-YPIMERNLYSGdEPWQLF--GNSEERVRYFITKLKKKNPRNSRYRRSIGdgKGTW 88 89************.788888877762555.6699999998659****6..34566788******************87655899* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ka+ k k++ + +g+ +g k++L + ++ + + +W+m+ey Itr_sc000185.1_g00020.1 89 KAQDKGKAISR-SGKIIGYKRSLRYENK--GSEHDGQWLMKEYY 129 *********99.999*********9843..333579*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-29 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.861 | 6 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-14 | 7 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS50270 | 8.947 | 72 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGQAKIPSGY RFRPTDIELL GFLALFVLGS LPFSWYPIME RNLYSGDEPW QLFGNSEERV 60 RYFITKLKKK NPRNSRYRRS IGDGKGTWKA QDKGKAISRS GKIIGYKRSL RYENKGSEHD 120 GQWLMKEYYF PDKVRENLEV SLRDTVLCRI KRKQNWDNTN HNESTIAEGI RDIIGDFTPK 180 LEPSESDTTR TTLTLALSTD D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-16 | 1 | 155 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-16 | 1 | 155 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160621.1 | 1e-103 | PREDICTED: NAC domain-containing protein 55-like isoform X1 | ||||
TrEMBL | M1AA79 | 7e-43 | M1AA79_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018201 | 1e-43 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 8e-18 | NAC domain containing protein 3 |