PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000185.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 383aa    MW: 42192.5 Da    PI: 6.0129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000185.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12209255354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h + Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av YI++L
  Itr_sc000185.1_g00001.1 209 RNHVASERQRREKLNHRFYALRSAVPNV-----SKMDKASLLADAVAYINEL 255
                              6799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-3010161IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474599.42E-18205272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.117206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-14209259No hitNo description
PfamPF000102.7E-10209255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17209267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSSSLPASTL QNRLQFIVDN GSPEMWLYAI FWQASGDGNG VVLSWGDGHF RGGRGGDTDQ  60
NVAKGNGEAD YPEWFYLSSV AKCFVAAEDL IVRTFDSGSY AWLSGDFGGA AFYDCGRVKE  120
AYMHGIKTLV FFSTSYGVVE LGSTEIIPQD GELLRHFQSL FTFNAAVPVA NRSPESSNSD  180
FHDIHPTTCG GNLGRRRKTS LSGNDQMTRN HVASERQRRE KLNHRFYALR SAVPNVSKMD  240
KASLLADAVA YINELKAKID DLEAKVGSRA ENPNPRKRMR ESTAMIIHEG TSSPSLTVDP  300
FGIEVEVKII GEEAIIRVQS PDVNFPAARL MNVLRELEVG IHHATVSCVA ELMLQDVVIR  360
VSGGPQEEAL KAIILQRLQT YQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-2191648195Transcription factor MYC3
4rqw_B5e-2191648195Transcription factor MYC3
4rs9_A5e-2191648195Transcription factor MYC3
4yz6_A5e-2191648195Transcription factor MYC3
5gnj_A1e-21210265863Transcription factor MYC2
5gnj_B1e-21210265863Transcription factor MYC2
5gnj_E1e-21210265863Transcription factor MYC2
5gnj_F1e-21210265863Transcription factor MYC2
5gnj_G1e-21210265863Transcription factor MYC2
5gnj_I1e-21210265863Transcription factor MYC2
5gnj_M1e-21210265863Transcription factor MYC2
5gnj_N1e-21210265863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208218RNHVASERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160505.10.0PREDICTED: transcription factor MYC4-like
TrEMBLA0A2G2XJU81e-107A0A2G2XJU8_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000318991e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-47bHLH family protein