PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000179.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 288aa    MW: 31644 Da    PI: 8.9241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000179.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-18853147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEde l ++v+++G ++W++I + ++ gR++k+c++rw + 
  Itr_sc000179.1_g00006.1  8 KGPWSPEEDEMLERLVEKYGARNWSLIGNSIP-GRSGKSCRLRWCNQ 53
                             79******************************.***********985 PP
2Myb_DNA-binding56.28.1e-1862104347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Itr_sc000179.1_g00006.1  62 PFTAEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 104
                              89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.516358IPR017930Myb domain
SuperFamilySSF466894.15E-325101IPR009057Homeodomain-like
SMARTSM007173.0E-17756IPR001005SANT/Myb domain
PfamPF002492.7E-18853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-26961IPR009057Homeodomain-like
CDDcd001671.05E-161052No hitNo description
SMARTSM007172.4E-1559107IPR001005SANT/Myb domain
PROSITE profilePS5129421.7760109IPR017930Myb domain
PfamPF002497.4E-1562104IPR001005SANT/Myb domain
CDDcd001671.22E-1262105No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2462108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAADRIKGP WSPEEDEMLE RLVEKYGARN WSLIGNSIPG RSGKSCRLRW CNQLSPSVEH  60
RPFTAEEDET IIRAHAKFGN KWATIARLLS GRTDNAIKNH WNSTLKRKCG SLSADLSFNP  120
PLKRSSSAGS PSDSDFSDIY KSIARTTTGN GKLPLPLPLP SVFPVMETPS FSAADPVTSL  180
SLSLPGSNEA PPLINRRNHL VPIPQLPPMS PPAKVYLPPQ SFQFAATPPP QAAEKPFFSP  240
EFLAELQEMI RKEVRNYMAG VEHNGLCTPA EAIQNAAAAA IGIWHRQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-3951114110B-MYB
1gv2_A7e-3971093105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-38710957159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-38710957159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-3971093105C-Myb DNA-Binding Domain
1msf_C6e-3971093105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153154.11e-166PREDICTED: transcription factor MYB44-like isoform X1
SwissprotO231603e-77MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KZQ61e-101A0A067KZQ6_JATCU; MYB family protein
STRINGevm.model.supercontig_21.1451e-100(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-73myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]