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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
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v4.0
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Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000179.1_g00006.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | MYB | ||||||||
| Protein Properties | Length: 288aa MW: 31644 Da PI: 8.9241 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 59.1 | 1e-18 | 8 | 53 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+++G ++W++I + ++ gR++k+c++rw +
Itr_sc000179.1_g00006.1 8 KGPWSPEEDEMLERLVEKYGARNWSLIGNSIP-GRSGKSCRLRWCNQ 53
79******************************.***********985 PP
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| 2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 62 | 104 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++
Itr_sc000179.1_g00006.1 62 PFTAEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 104
89******************.*********.***********986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 26.516 | 3 | 58 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.15E-32 | 5 | 101 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.0E-17 | 7 | 56 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.7E-18 | 8 | 53 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 9 | 61 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.05E-16 | 10 | 52 | No hit | No description |
| SMART | SM00717 | 2.4E-15 | 59 | 107 | IPR001005 | SANT/Myb domain |
| PROSITE profile | PS51294 | 21.77 | 60 | 109 | IPR017930 | Myb domain |
| Pfam | PF00249 | 7.4E-15 | 62 | 104 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.22E-12 | 62 | 105 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 62 | 108 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 288 aa Download sequence Send to blast |
MEAADRIKGP WSPEEDEMLE RLVEKYGARN WSLIGNSIPG RSGKSCRLRW CNQLSPSVEH 60 RPFTAEEDET IIRAHAKFGN KWATIARLLS GRTDNAIKNH WNSTLKRKCG SLSADLSFNP 120 PLKRSSSAGS PSDSDFSDIY KSIARTTTGN GKLPLPLPLP SVFPVMETPS FSAADPVTSL 180 SLSLPGSNEA PPLINRRNHL VPIPQLPPMS PPAKVYLPPQ SFQFAATPPP QAAEKPFFSP 240 EFLAELQEMI RKEVRNYMAG VEHNGLCTPA EAIQNAAAAA IGIWHRQN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 7e-39 | 5 | 111 | 4 | 110 | B-MYB |
| 1gv2_A | 7e-39 | 7 | 109 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 4e-38 | 7 | 109 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 4e-38 | 7 | 109 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 6e-39 | 7 | 109 | 3 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 6e-39 | 7 | 109 | 3 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019153154.1 | 1e-166 | PREDICTED: transcription factor MYB44-like isoform X1 | ||||
| Swissprot | O23160 | 3e-77 | MYB73_ARATH; Transcription factor MYB73 | ||||
| TrEMBL | A0A067KZQ6 | 1e-101 | A0A067KZQ6_JATCU; MYB family protein | ||||
| STRING | evm.model.supercontig_21.145 | 1e-100 | (Carica papaya) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1586 | 24 | 71 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37260.1 | 1e-73 | myb domain protein 73 | ||||
| Publications ? help Back to Top | |||
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