PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000176.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 482aa    MW: 53391.7 Da    PI: 7.5503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000176.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088197217323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C++Cgk F +   L  H++ H
  Itr_sc000176.1_g00015.1 197 CKKCGKGFDSIRALYGHMKIH 217
                              *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.55981IPR015880Zinc finger, C2H2-like
PfamPF139120.0336182IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806158185IPR007087Zinc finger, C2H2
SMARTSM003555.1158180IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.41E-9159217No hitNo description
PfamPF139121.8E-7160182IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
PfamPF139123.6E-4195219IPR007087Zinc finger, C2H2
SMARTSM003550.018195217IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.177195222IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
PfamPF139127.6E-10405429IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037405432IPR007087Zinc finger, C2H2
SMARTSM003550.65405427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MFAFHARLSA APIYSQTVPS KATSSTHRDR VWRISGNFSI WACLDFLSNP MGEVQEPKFF  60
CKFCNKACFT GKSLGGHMRC HLDLIAAAKK QKLKPQSSEG EDLGVSEEAL ANKNQEKGKR  120
MSFGENGDQA SYGLREKPLK SWKVSDSKHC GLKKRNKDLC KECGKRFPSV KALAGHLKCH  180
SRKGIGIEEE EEENHLCKKC GKGFDSIRAL YGHMKIHSKR SKPSSSSNGE ESAQNLSDLE  240
TMCPVRKKRS TIRYKLTSSS NPPLSAVSEF EEAQDAAMCL MMLSRGVKTW NEFLSSANCE  300
SPPFFCKEEM PISGYDDDDD ISWKNISEIC VNGCITIEPF KNPEMDEASF DLHYLGMGEM  360
GETSTSIQVS EAKPKLEARA ECNLSTMELE TVMGIPETGT RSREHSCPVC FKVFQSGQAL  420
GGHKRAHYSA TIEPKVKKEN LSDIHEFLDL NLPVNAATGT AMDGAMEDRV WCIGSAGLLI  480
SN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185226.10.0PREDICTED: zinc finger protein ZAT1-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-18C2H2-like zinc finger protein