PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000168.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 479aa    MW: 52944.6 Da    PI: 6.9373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000168.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.22.4e-1091054781374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaal 81 
                              lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+ ++f+++La rla  +  +++  l+p ++ +       se+  al
  Itr_sc000168.1_g00020.1 105 LVQLLISCAEAVACRDKSRASVLLSELRSSALVFGTSFQRVSSCFVQGLADRLALvQPLGTVGYLTPAAALDAAagdaASEKDEAL 190
                              689**************************************************984334555555444443333466789999999 PP

                     GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                              +l +e++P ++f+h +aN  I+ea+ege+ +H++D+++s    +G QW  L+q Las +++  +lRiT+vg       ++ +++ge
  Itr_sc000168.1_g00020.1 191 RLVYEICPHIQFGHYIANASIVEALEGESFIHVVDLGLSlglpHGHQWRHLIQRLASSNRPLRRLRITAVGT----LLHRFRSIGE 272
                              ***********************************98874444778**************************....99******** PP

                     GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L+++A+  g+++ef++ v+++le+l+ +++++  gE+laVn+vlqlhr+++es    +   +vL+++ +lsPk++v+veq++ hn
  Itr_sc000168.1_g00020.1 273 ELKDYASGHGINLEFSI-VESNLETLKASDIKIVDGEVLAVNSVLQLHRVVKESRGALN---SVLQIIHELSPKILVLVEQDSGHN 354
                              ****************9.7********************************88877777...8*********************** PP

                     GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                              ++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++
  Itr_sc000168.1_g00020.1 355 GPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVA 438
                              *******************************************************************************96..688 PP

                     GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              qak  l+k++  +gy+v ee+g+lvlgW+++p+v++S+W+
  Itr_sc000168.1_g00020.1 439 QAKQWLAKTSpCEGYTVTEEKGCLVLGWHSKPIVAASCWK 478
                              9***9999999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.86979459IPR005202Transcription factor GRAS
PfamPF035148.4E-107105478IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSPGLINDEL AYSSNPYATI LKRNADSCIP VFCDEMLESK RPKRAPSIGD CLGSNEIRNS  60
LSRVHFRDHV LAYSQRFLAA EAVELQAADE MIGSDNGESA DGMKLVQLLI SCAEAVACRD  120
KSRASVLLSE LRSSALVFGT SFQRVSSCFV QGLADRLALV QPLGTVGYLT PAAALDAAAG  180
DAASEKDEAL RLVYEICPHI QFGHYIANAS IVEALEGESF IHVVDLGLSL GLPHGHQWRH  240
LIQRLASSNR PLRRLRITAV GTLLHRFRSI GEELKDYASG HGINLEFSIV ESNLETLKAS  300
DIKIVDGEVL AVNSVLQLHR VVKESRGALN SVLQIIHELS PKILVLVEQD SGHNGPFFLG  360
RFMEALHYYS AIFDSLDAML PKYDTRRAKI EQFYFAEEIK NIVSCEGPAR VERHERVDQW  420
RRRMSRAGFQ AAPIKMVAQA KQWLAKTSPC EGYTVTEEKG CLVLGWHSKP IVAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5211247726378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158789.10.0PREDICTED: DELLA protein GAI1-like
TrEMBLA0A1S3XN640.0A0A1S3XN64_TOBAC; DELLA protein RGL1-like
STRINGXP_009603492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-74RGA-like 1