PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000162.1_g00035.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 317aa    MW: 33556.5 Da    PI: 8.6878
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000162.1_g00035.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27.3e-3946144289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              ++k+++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s
  Itr_sc000162.1_g00035.1  46 PAKRTSTKDRHTKVDGRGRRIRMPATAAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISVRSSGSTMS 131
                              789******************************************************************99965555555555333 PP

                      TCP  87 sg..........k 89 
                              ++          +
  Itr_sc000162.1_g00035.1 132 ASshlrninsyfH 144
                              3333444444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3850153IPR005333Transcription factor, TCP
PROSITE profilePS5136925.99552106IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEADNNGGRL NFPLQLLEKT EDIISNSSSM STAIIPVSQD LSKKAPAKRT STKDRHTKVD  60
GRGRRIRMPA TAAARVFQLT KELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFTSLN  120
ISVRSSGSTM SASSHLRNIN SYFHGYSQLR LMEESQRRIM LGLSSEYSPA AAALALNFGF  180
ANSNDEVNVA MLQAKQEAGG DRHSSPALHN YMSGAGAGNY MLQSTSGCIP ASQGQIPATT  240
TLYRMGNNHN PSTSGGGHDP CLWALPANNN GGGLHLMNFP TPVVAVSNGG ATVAEGQPTG  300
MFAATLNGFR SSMDDSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164895.10.0PREDICTED: transcription factor TCP15-like
TrEMBLA0A328D3V81e-145A0A328D3V8_9ASTE; Uncharacterized protein
STRINGXP_010258392.16e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-55TCP family protein