PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000161.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 266aa    MW: 30094.8 Da    PI: 4.8506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000161.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEd++l+  ++ +G ++W+  ++  g+ R++k+c++rw +yl
  Itr_sc000161.1_g00012.1 14 KGLWSKEEDDKLKTFIESHGHKNWRQLPKIAGLSRCGKSCRLRWMNYL 61
                             678*******************************************97 PP
2Myb_DNA-binding53.74.7e-1767112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+++ +Ede++v+++++lG++ W++ a+ ++ gR+++++k++w+++l
  Itr_sc000161.1_g00012.1  67 KGAFSVQEDEIIVKLHNKLGNK-WSAMAELLP-GRSDNEIKNHWHTHL 112
                              799*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.18961IPR017930Myb domain
SuperFamilySSF466899.36E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-221568IPR009057Homeodomain-like
CDDcd001671.62E-101761No hitNo description
PROSITE profilePS5129424.64462116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2569115IPR009057Homeodomain-like
CDDcd001671.09E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVKTPSVDKN GIKKGLWSKE EDDKLKTFIE SHGHKNWRQL PKIAGLSRCG KSCRLRWMNY  60
LRPGLKKGAF SVQEDEIIVK LHNKLGNKWS AMAELLPGRS DNEIKNHWHT HLKNRAKQTQ  120
KPEESMEELL PPSAETSEFS DFEFKPPQDD IFNILNLDEV SLPQNSQTLD IPLSQEVSAV  180
SGGGISSSSS SSSISDWILD DISTISLESF MDPLESFWTE PFVADTLYPK NVGYPVTLFE  240
GENFPVQTSP LEGNFVPPYF EDAAWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
1gv2_A2e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-25141246159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-25141246159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
1mse_C2e-25141164105C-Myb DNA-Binding Domain
1msf_C2e-25141164105C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158784.11e-154PREDICTED: myb-related protein 308-like
STRINGcassava4.1_023393m4e-68(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.15e-53myb domain protein 41