PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000159.1_g00028.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 958aa MW: 109978 Da PI: 9.4236

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000159.1_g00028.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCd+e+a+iifs++gkl+e++s Itr_sc000159.1_g00028.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDVEIALIIFSPRGKLHEFAS 59 8***********************************************86 PP
2	K-box	58	4e-20	83	173	8	98
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +e ++ e+lqqe++ +k++i+ L+ ++R+llG +L+s +++e + +eq++++s++ iR++K+++++++ie+l +k k l en + Itr_sc000159.1_g00028.1 83 PVEGQHIEQLQQEIEVMKQKIDCLEASKRRLLGLGLGSSTFEEVELIEQHVQRSVNIIRARKMKIFKDSIEQLEEKGKVLTAENAM 168 388999******************************************************************************** PP K-box 94 Lrkkl 98 L +k+ Itr_sc000159.1_g00028.1 169 LWEKY 173 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.09	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-28	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.02E-41	3	72	No hit	No description
SuperFamily	SSF55455	3.14E-31	3	90	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.7E-19	87	173	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.681	89	179	IPR002487	Transcription factor, K-box
Pfam	PF01501	1.2E-95	597	912	IPR002495	Glycosyl transferase, family 8
SuperFamily	SSF53448	9.84E-70	628	697	IPR029044	Nucleotide-diphospho-sugar transferases
CDD	cd06429	2.27E-125	628	926	No hit	No description
Gene3D	G3DSA:3.90.550.10	6.3E-76	630	699	IPR029044	Nucleotide-diphospho-sugar transferases
SuperFamily	SSF53448	9.84E-70	733	937	IPR029044	Nucleotide-diphospho-sugar transferases
Gene3D	G3DSA:3.90.550.10	6.3E-76	735	936	IPR029044	Nucleotide-diphospho-sugar transferases

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010289	Biological Process	homogalacturonan biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity
GO:0047262	Molecular Function	polygalacturonate 4-alpha-galacturonosyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEIALIIFSP RGKLHEFASS 60 STQEIIEKYR KHVMNARAEN LSPVEGQHIE QLQQEIEVMK QKIDCLEASK RRLLGLGLGS 120 STFEEVELIE QHVQRSVNII RARKMKIFKD SIEQLEEKGK VLTAENAMLW EKYNGLEPRK 180 VSKEEDDESH DSTLYVNGGD EKSDVETELF IGLPLEGKVM ASKKGLSGVN SNHRNRGGGS 240 RFPVVVLIFC SCIAPLMFFI GRGLYTSGSI DKNHVSTTSG QMVFAIIKAS TDDLGPLSLD 300 SFRKSNLSAS WRFVGQVSLA RRNRSISLES NVKIGIMRKE TSKGKTDEYL HEDDSQFVDE 360 HVKVARRNGK GQKPVEFILM TCTNVFYAMH MFMRACVCIF HFSDCFNHKG HDIYIYSITL 420 QQLRQKKREK RAADLAKQDD EVTVKLENAA MERSKSVDSA VLGKYSIWRR ENENENPDST 480 VRLMRDQVIM ARVYLSIAGM KKKSDLAQEL QQRLKESQRA LGEASSDSDL PRSSHEKIKT 540 MGHVLTKARE QLYDCKLVTG KLRAMLQTAD EEVRSLKRQS TFLSQLAAKT IPNGIHCLSM 600 RLTIDYYLLP PEKREFPRSE NLENPNLYHY ALFSDNVLAA SVVVNSTIMN AKEPEKHVFH 660 LVTDKLNFGA MNMWFLLNPP GKATIHVENV DEFKWLNSSY CVVLRQLESA AMKEYYFKAA 720 HPTTLSAGSS NLKYRNPKYL SMLNHLRFYL PEVYPKLDKI LFLDDDIVVQ KDLTRLWSVD 780 LHGKVNGAVE TCGQSFHRFD KYLNFSNPHI ARHFDPNACG WAYGMNMFDL KEWKKKDITG 840 IYHKWQNMNE DRALWKLGTL PPGLITFYGL THPLEKSWHV LGLGYNPSID RSEIDNAAVI 900 HYNGNMKPWL ELAMAKYRPY WTKYIKFDHP YIRGCKRGFW TCFVIAVENS FHRVFLLP

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEIALIIFSP RGKLHEFASS  60
STQEIIEKYR KHVMNARAEN LSPVEGQHIE QLQQEIEVMK QKIDCLEASK RRLLGLGLGS  120
STFEEVELIE QHVQRSVNII RARKMKIFKD SIEQLEEKGK VLTAENAMLW EKYNGLEPRK  180
VSKEEDDESH DSTLYVNGGD EKSDVETELF IGLPLEGKVM ASKKGLSGVN SNHRNRGGGS  240
RFPVVVLIFC SCIAPLMFFI GRGLYTSGSI DKNHVSTTSG QMVFAIIKAS TDDLGPLSLD  300
SFRKSNLSAS WRFVGQVSLA RRNRSISLES NVKIGIMRKE TSKGKTDEYL HEDDSQFVDE  360
HVKVARRNGK GQKPVEFILM TCTNVFYAMH MFMRACVCIF HFSDCFNHKG HDIYIYSITL  420
QQLRQKKREK RAADLAKQDD EVTVKLENAA MERSKSVDSA VLGKYSIWRR ENENENPDST  480
VRLMRDQVIM ARVYLSIAGM KKKSDLAQEL QQRLKESQRA LGEASSDSDL PRSSHEKIKT  540
MGHVLTKARE QLYDCKLVTG KLRAMLQTAD EEVRSLKRQS TFLSQLAAKT IPNGIHCLSM  600
RLTIDYYLLP PEKREFPRSE NLENPNLYHY ALFSDNVLAA SVVVNSTIMN AKEPEKHVFH  660
LVTDKLNFGA MNMWFLLNPP GKATIHVENV DEFKWLNSSY CVVLRQLESA AMKEYYFKAA  720
HPTTLSAGSS NLKYRNPKYL SMLNHLRFYL PEVYPKLDKI LFLDDDIVVQ KDLTRLWSVD  780
LHGKVNGAVE TCGQSFHRFD KYLNFSNPHI ARHFDPNACG WAYGMNMFDL KEWKKKDITG  840
IYHKWQNMNE DRALWKLGTL PPGLITFYGL THPLEKSWHV LGLGYNPSID RSEIDNAAVI  900
HYNGNMKPWL ELAMAKYRPY WTKYIKFDHP YIRGCKRGFW TCFVIAVENS FHRVFLLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-17	1	72	1	72	MEF2C
5f28_B	7e-17	1	72	1	72	MEF2C
5f28_C	7e-17	1	72	1	72	MEF2C
5f28_D	7e-17	1	72	1	72	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in pectin biosynthesis. Catalyzes the transfer of galacturonic acid from uridine 5'-diphosphogalacturonic acid onto the pectic polysaccharide homogalacturonan. {ECO:0000269\|PubMed:16540543}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019259123.1	0.0	PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase
Swissprot	Q9LE59	0.0	GAUT1_ARATH; Polygalacturonate 4-alpha-galacturonosyltransferase
TrEMBL	A0A484LH69	0.0	A0A484LH69_9ASTE; Hexosyltransferase
STRING	XP_009785495.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-59	AGAMOUS-like 20

Publications ? help Back to Top
Dunkley TP,Watson R,Griffin JL,Dupree P,Lilley KS Localization of organelle proteins by isotope tagging (LOPIT). Mol. Cell Proteomics, 2004. 3(11): p. 1128-34 [PMID:15295017] Sterling JD, et al. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 5236-41 [PMID:16540543] Persson S, et al. The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell, 2007. 19(1): p. 237-55 [PMID:17237350] Bischoff V,Cookson SJ,Wu S,Scheible WR Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. J. Exp. Bot., 2009. 60(3): p. 955-65 [PMID:19269997] Caffall KH,Pattathil S,Phillips SE,Hahn MG,Mohnen D Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testa. Mol Plant, 2009. 2(5): p. 1000-14 [PMID:19825675] Yin Y,Chen H,Hahn MG,Mohnen D,Xu Y Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8. Plant Physiol., 2010. 153(4): p. 1729-46 [PMID:20522722] Kong Y, et al. Molecular analysis of a family of Arabidopsis genes related to galacturonosyltransferases. Plant Physiol., 2011. 155(4): p. 1791-805 [PMID:21300919] Atmodjo MA, et al. Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex. Proc. Natl. Acad. Sci. U.S.A., 2011. 108(50): p. 20225-30 [PMID:22135470] Lund CH, et al. A reversible Renilla luciferase protein complementation assay for rapid identification of protein-protein interactions reveals the existence of an interaction network involved in xyloglucan biosynthesis in the plant Golgi apparatus. J. Exp. Bot., 2015. 66(1): p. 85-97 [PMID:25326916]