PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000157.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 423aa MW: 47056.1 Da PI: 8.2142

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000157.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103	2.6e-32	17	112	1	95
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaC+++r++C+++ Cvl p+fp++++ +f ++h++FG snv+k+l++l+++er +a++sl++eA+ +++dPv+G +g +++l+q Itr_sc000157.1_g00013.1 17 ACAACRHQRKQCKAKdCVLWPHFPSDRMVDFLAIHRVFGISNVTKMLRELSNDERAAAAASLLWEAHSWTEDPVHGPLGKFNRLEQ 102 7*********8544****************************************************************** PP DUF260 86 qleqlkaela 95 +l+ lka l Itr_sc000157.1_g00013.1 103 ELNALKASLF 112 ***99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.062	16	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-31	17	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MEKNKDDNEA SNSNSPACAA CRHQRKQCKA KDCVLWPHFP SDRMVDFLAI HRVFGISNVT 60 KMLRELSNDE RAAAAASLLW EAHSWTEDPV HGPLGKFNRL EQELNALKAS LFQYQPAMDN 120 NNNILPQGVK ESLLVSNGGF SNSYPANFGQ RWSDSVTPYK PQDIMASCLQ LPQQQPPINP 180 PIPGLIRGNE YFGTMYSAPP DLPFIRDDDF VGTIFSSPPI RGEDNIGTSF NSLSRSNVKE 240 DGGTTFSTSP SFPIRREDRV GTSFNRLSRS NNVRGTVFST SPSPQISGKD RVGTSFNRRL 300 SSFNVRGEEN RGIIFSNSPS LWIKEEDKVG TSFNNLSGSN VRGEENYGTF FSTSPNLPIK 360 GKDKVGTSFN SLSPFNFRGD EDNVRTQFTS SVNLPVKRDG DPTAFYQQHP RNSNPDDARG 420 RHL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MEKNKDDNEA SNSNSPACAA CRHQRKQCKA KDCVLWPHFP SDRMVDFLAI HRVFGISNVT  60
KMLRELSNDE RAAAAASLLW EAHSWTEDPV HGPLGKFNRL EQELNALKAS LFQYQPAMDN  120
NNNILPQGVK ESLLVSNGGF SNSYPANFGQ RWSDSVTPYK PQDIMASCLQ LPQQQPPINP  180
PIPGLIRGNE YFGTMYSAPP DLPFIRDDDF VGTIFSSPPI RGEDNIGTSF NSLSRSNVKE  240
DGGTTFSTSP SFPIRREDRV GTSFNRLSRS NNVRGTVFST SPSPQISGKD RVGTSFNRRL  300
SSFNVRGEEN RGIIFSNSPS LWIKEEDKVG TSFNNLSGSN VRGEENYGTF FSTSPNLPIK  360
GKDKVGTSFN SLSPFNFRGD EDNVRTQFTS SVNLPVKRDG DPTAFYQQHP RNSNPDDARG  420
RHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	18	114	12	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	18	114	12	114	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-21	LOB domain-containing protein 2