PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000157.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 740aa MW: 81303.4 Da PI: 6.9709 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v Itr_sc000157.1_g00007.1 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAV 232 99****************************963.3445679********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++ ++el+++v+r+ Itr_sc000157.1_g00007.1 233 LFLRS--GDGELRLGVRRT 249 ***54..688899*99997 PP | |||||||
2 | Auxin_resp | 104.4 | 1.4e-34 | 274 | 354 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stk vF+++YnPr s+seF+v+++k++++l +++s+Gm fkm+ eted +er +G++ gvsd+dpvrWp+SkWrsL Itr_sc000157.1_g00007.1 274 VVNAISTKGVFHICYNPRHSSSEFIVPYHKFSRSLVHSFSAGMTFKMRHETEDTAERY-TGLILGVSDIDPVRWPGSKWRSL 354 689***************************************************9975.*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-40 | 142 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-42 | 143 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.87E-22 | 146 | 248 | No hit | No description |
SMART | SM01019 | 4.3E-24 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-22 | 148 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.648 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.7E-31 | 275 | 354 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MSGLIDLNTV SNGDAGDETT TSSSSGNSEL TASSGTAVAS VCMELWHACA GPLISLPKKG 60 SAVVYLPQGH LEHLCDYTAV AYDLPPHVFC RVVDVKLQAE LATDEVYAHV SLVPDNQIEQ 120 KWSNGETEVD NGEDDNEGIG KSTAPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK 180 QQRPSQELVA RDLHGIEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRSGDG 240 ELRLGVRRTE QAKSGTPYLA PFSQHMNISG IADVVNAIST KGVFHICYNP RHSSSEFIVP 300 YHKFSRSLVH SFSAGMTFKM RHETEDTAER YTGLILGVSD IDPVRWPGSK WRSLLMLVFE 360 NFEVLSVHVR WDDLNSTRHN RVSPWEIEPS GALPGPSSMV VPAAKRTRVG LPNVKADFSI 420 PGDRMAVSEN GDPSRFQVLQ GQEVMGLNTT CDGIDRFPPR IRYFPDSDDF RISGMSRGII 480 PQFADPFESH ERTGFVESQR FNKVLQGQET FPNILYGKGV TGPVQPTHGS GIVGGIHVRS 540 HLSTRSTPPI QDCIAQRNPS TPIVQVSSPP SVLMFQQANS PAKFQPLYNH NLGKLDNGNP 600 AAKYERQLPS CPPFEDGPRV EDLQRISSFS SHKEHKLLGF SHLLGSQTSV KGNQNLVSSM 660 CSSNCRIFGF PLNEGRSAIT KDNNPIQATT SHGHEITPFP CSEGQLHLRP PLITSGVAGS 720 NYTNVNDLYP ARDALLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-103 | 35 | 389 | 13 | 354 | Auxin response factor 1 |
4ldy_B | 1e-103 | 35 | 389 | 13 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162905.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X2 | ||||
Swissprot | O23661 | 1e-173 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1J6IMS3 | 0.0 | A0A1J6IMS3_NICAT; Auxin response factor | ||||
STRING | XP_009589968.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-172 | ARF family protein |