PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000149.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 314aa MW: 34956.9 Da PI: 5.3062 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.9 | 1.2e-36 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCa+Ck++rr+C+ dC+lapyfpa+qp+ f+n+h+lFG+sn++k+lk++++++r am+s++ +A+ara+ PvyG+v+ i++l + Itr_sc000149.1_g00016.1 10 ACASCKYQRRRCKVDCPLAPYFPADQPNMFQNAHRLFGVSNIIKILKQIDPSQRGVAMKSIIDQANARAKYPVYGCVAEIQQLMIK 95 7************************************************************************************* PP DUF260 87 leqlkaelallkeel 101 ++ +++el++++++l Itr_sc000149.1_g00016.1 96 IQLAEEELQAVQAQL 110 **********99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.831 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-36 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MTRKGGTSQA CASCKYQRRR CKVDCPLAPY FPADQPNMFQ NAHRLFGVSN IIKILKQIDP 60 SQRGVAMKSI IDQANARAKY PVYGCVAEIQ QLMIKIQLAE EELQAVQAQL AFYRQHNQQQ 120 QQQEISSTDS VLPLQLGTLP PPLPISPPTN GFTLFHQDPS PQYCNAAAPV TAFPVSHPSS 180 YSNATNAAYN TSNPTAYVNS KDNNNINSLW IQQHFANSNT NNNNNTSNPM MMQPQMGSAQ 240 PITIQQEEEN IQDYDEIHPF FDTIDDRQSY IDSKEAYESS SESSLKDIAQ SVEHVSENEL 300 KSAAACFSLT SVNL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-26 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-26 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019197230.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
TrEMBL | A0A1S4B091 | 1e-130 | A0A1S4B091_TOBAC; LOB domain-containing protein 27-like | ||||
STRING | XP_009588931.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-48 | LOB domain-containing protein 27 |