PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000144.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34826.9 Da    PI: 8.225
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000144.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.9e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr+g++KKAeELSvLCda+va+iifsstgkl++y+s
  Itr_sc000144.1_g00002.1  9 KKIDNATARQVTFSKRRKGLFKKAEELSVLCDADVALIIFSSTGKLFDYAS 59
                             68***********************************************86 PP
2K-box61.73e-211372181899
                    K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              + ++++L kei  + + +R++ GedL+ +s++eLqqLe+ Le++l+++ +kK e ++++i+elq+k  +l een++L+++++
  Itr_sc000144.1_g00002.1 137 NANHSRLSKEIADMTHRLRQMRGEDLQGMSIEELQQLERSLETGLSRVIEKKGEKIMKEINELQQKGMNLMEENERLTQQVM 218
                              46789**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.095161IPR002100Transcription factor, MADS-box
CDDcd002652.51E-35361No hitNo description
PRINTSPR004043.4E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-28364IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.258133223IPR002487Transcription factor, K-box
PfamPF014865.1E-18138217IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVREKIQIKK IDNATARQVT FSKRRKGLFK KAEELSVLCD ADVALIIFSS TGKLFDYASS  60
SPHIGKRLQG RLHLECTFWI VSRKRKDSNE LLNSKTRLKV WHYFAISMKG ILERRNLHSK  120
NLEKMDQPSL ELQLVENANH SRLSKEIADM THRLRQMRGE DLQGMSIEEL QQLERSLETG  180
LSRVIEKKGE KIMKEINELQ QKGMNLMEEN ERLTQQVMAI SNGQRVAAVI NSDNMLNEEG  240
LSSESITNVC NSTSPPQDYD DSSDTSLKLG LVLRCPTEAK NQEEKPWEPL YHMPVLSSSI  300
HDIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-18160160MEF2C
5f28_B7e-18160160MEF2C
5f28_C7e-18160160MEF2C
5f28_D7e-18160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0542550.0AB054255.1 Ipomoea batatas IbMADS3 mRNA, complete cds.
GenBankAF3452460.0AF345246.1 Ipomoea batatas MADS box transcription factor (MADS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182444.11e-145PREDICTED: MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY61e-107JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLQ9AT621e-137Q9AT62_IPOBA; IbMADS3
STRINGXP_009783886.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.26e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]