PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000140.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 282aa    MW: 31967.4 Da    PI: 8.6571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000140.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.8e-54101351128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL+++++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkat
  Itr_sc000140.1_g00008.1  10 LPPGFRFHPTDEELIMYYLRNQATSRPCPV-SIIPEVDVYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKAT 94 
                              79****************************.89***************99999********************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk+++s +++ vg+kk Lvfykgr pkg ktdW+mheyrl
  Itr_sc000140.1_g00008.1  95 GTDKAIYS-GSKYVGVKKALVFYKGRPPKGIKTDWIMHEYRL 135
                              ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-667162IPR003441NAC domain
PROSITE profilePS5100561.29510162IPR003441NAC domain
PfamPF023651.3E-2611135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVGGKQTSDL PPGFRFHPTD EELIMYYLRN QATSRPCPVS IIPEVDVYKF DPWELPEKAE  60
FGENEWYFFT PRDRKYPNGV RPNRAAVSGY WKATGTDKAI YSGSKYVGVK KALVFYKGRP  120
PKGIKTDWIM HEYRLSESRA LPARQNGSMR LDDWVLCRIY KKKNLGKANN TGMMMMKTEV  180
EETNPQLIAS CSSEGGPQVQ GMKLPRACSL THLLEMDCFG SISQLLGDNN NINATFDNQN  240
PTLMTNNNGI VPFGLGEVVP HQYSQNSIFN QPIFVNPAFQ FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-721016417167NO APICAL MERISTEM PROTEIN
1ut4_B1e-721016417167NO APICAL MERISTEM PROTEIN
1ut7_A1e-721016417167NO APICAL MERISTEM PROTEIN
1ut7_B1e-721016417167NO APICAL MERISTEM PROTEIN
3swm_A2e-721016420170NAC domain-containing protein 19
3swm_B2e-721016420170NAC domain-containing protein 19
3swm_C2e-721016420170NAC domain-containing protein 19
3swm_D2e-721016420170NAC domain-containing protein 19
3swp_A2e-721016420170NAC domain-containing protein 19
3swp_B2e-721016420170NAC domain-containing protein 19
3swp_C2e-721016420170NAC domain-containing protein 19
3swp_D2e-721016420170NAC domain-containing protein 19
4dul_A1e-721016417167NAC domain-containing protein 19
4dul_B1e-721016417167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6391460.0AB639146.1 Ipomoea nil InNAP mRNA for transcription factor InNAP, complete cds, cultivar: Violet.
GenBankAB6391470.0AB639147.1 Ipomoea nil InNAP mRNA for transcription factor InNAP, complete cds, cultivar: Peking Tendan.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166455.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BNG71e-139NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A2Z5HW710.0A0A2Z5HW71_IPOBA; NAC3 protein
STRINGXP_009598866.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]