PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000139.1_g00044.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 393aa    MW: 44623.1 Da    PI: 6.4621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000139.1_g00044.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005494116323
                              ET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                              C+   Cgk+F +   L++H   H
  Itr_sc000139.1_g00044.1  94 CSyeGCGKTFIDAGALRKHSHIH 116
                              77779**************7766 PP
2zf-C2H214.97.5e-05121145123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y C+  +Cgk F ++s LkrH   H
  Itr_sc000139.1_g00044.1 121 YICHyeNCGKKFLDSSKLKRHFLIH 145
                              89*******************8877 PP
3zf-C2H223.61.3e-07151175123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++Cp   Cgk Fs   nLk+H+rtH
  Itr_sc000139.1_g00044.1 151 FVCPveGCGKAFSLDFNLKSHMRTH 175
                              89**********************9 PP
4zf-C2H2171.7e-05181206123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              + Cp   Cgk++ + + Lk+Hi+t H
  Itr_sc000139.1_g00044.1 181 HICPypECGKRYAHEYKLKNHISTtH 206
                              679999*****************999 PP
5zf-C2H216.23e-05244269123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              y+Cp   C+k + + + L+ H+r+ H
  Itr_sc000139.1_g00044.1 244 YVCPyeGCDKAYIHEYKLNLHLRKeH 269
                              99**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-1388118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003292116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78392121IPR007087Zinc finger, C2H2
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576673.3E-895145No hitNo description
Gene3DG3DSA:3.30.160.608.5E-14119141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.108121150IPR007087Zinc finger, C2H2
SMARTSM003550.013121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.99E-15132184No hitNo description
Gene3DG3DSA:3.30.160.607.1E-21142173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.6E-4151175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.986151180IPR007087Zinc finger, C2H2
PROSITE patternPS000280153175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-12174204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.038181206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577181211IPR007087Zinc finger, C2H2
PROSITE patternPS000280183206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-9238267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-6239267No hitNo description
PROSITE profilePS5015710.783244274IPR007087Zinc finger, C2H2
SMARTSM003550.0021244269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAQXXXXXX XXXXXXXXXX XXXLFDRRPI AKSRAPATKW FKEWVPQDVV ATGGKCLLLK  60
WVNEATLKAL KEKSVEPEIP EAEPEPATEV LFLCSYEGCG KTFIDAGALR KHSHIHGERQ  120
YICHYENCGK KFLDSSKLKR HFLIHTGERA FVCPVEGCGK AFSLDFNLKS HMRTHSQENY  180
HICPYPECGK RYAHEYKLKN HISTTHQKSA TPEVAKYVQH IEKPTKTPKS SGGAYASASS  240
DRPYVCPYEG CDKAYIHEYK LNLHLRKEHP GHFPDENAKN AQPPASAAVE NEMDDESDQE  300
AAYAGKRGNG KAQKQSSRPK PNLKLPPAKV TQRKGSTAPA NLNVVKKPWP VKEDIYEEEE  360
DSEETEEERD DVGDGWRYAG NNEDDDEETE YED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-35942048116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171783.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-143YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A328D6K40.0A0A328D6K4_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]