PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000134.1_g00059.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 1096aa    MW: 121843 Da    PI: 6.5424
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000134.1_g00059.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.3e-23151252199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      +++++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L++gD v
  Itr_sc000134.1_g00059.1 151 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QEIVSRDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLCAGDAV 235
                              99*****************************9555444.38********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F +  +++ +l++++ r+
  Itr_sc000134.1_g00059.1 236 LFIR--DEKSQLLLGIKRA 252
                              ***4..4666678888765 PP
2Auxin_resp122.53.1e-40277359183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+++s+F+++YnPras+ eFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Itr_sc000134.1_g00059.1 277 AAHAAANNSPFTIFYNPRASPCEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 359
                              79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
SuperFamilySSF1019363.4E-43140280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-41143266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-19150251No hitNo description
SMARTSM010194.1E-22151253IPR003340B3 DNA binding domain
PfamPF023623.1E-20151252IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224151253IPR003340B3 DNA binding domain
PfamPF065073.4E-35277359IPR010525Auxin response factor
PfamPF023091.1E-89631050IPR033389AUX/IAA domain
PROSITE profilePS5174526.2119641048IPR000270PB1 domain
SuperFamilySSF542779.81E-99671042No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
MKVPSNGYIA NTGEGVCPNK FLAICFSIFS VSCDAFPAIW ERKVINSELW HACAGPLVSL  60
PAVGSLVVYF PQGHSEQVAA SMQKETDGIP NYPNLPSKLI CMLHNVTLHA DPESDEVYAQ  120
MTLQPVNKYD QEALLISDMG LKQNRQPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  180
DYSMQPPAQE IVSRDLHDQT WTFRHIYRGQ PKRHLLTTGW SVFVSSKRLC AGDAVLFIRD  240
EKSQLLLGIK RANRQQPALS SSVISSDSMH IGILAAAAHA AANNSPFTIF YNPRASPCEF  300
VIPLAKYNKA MYTQVSLGMR FRMMFETEES GVRRYMGTIT GISDLDPVRW KNSQWRNLQV  360
GWDESTAGER PTRVSIWDIE PVVTPFYICP PPFFRPKFPR QPGFMGDESD MENVFRRGMP  420
WIGDEFGGLK DASSSMFPGL SLVQWMSMQQ NNQVPAQSGL NQTALQGNLG VDNHSRLLNF  480
QSPTFAAQNL QFNKANQQVS QLQQTPSPTW PQQQQQMQLQ HSLQPSLPQQ QPQQQCQLQP  540
QQNMHSSSLS NGVVPSQIPN QSLPQSAMHS QLQQQQQQLM AGNVQLPQNP PAASKPTFPQ  600
TSLPQESPFQ QQIDQQSVLL HKPQQQQTQL QQAPLQLLQQ SLMQRPQAHQ SSQPNLSEHQ  660
LQLQMLQKLQ QQQQQQQQQQ QQLLSPVGSN LEQLPQQQQV LQQNRQSQPP PLPQQQLGNN  720
SFSTSPLLQS PKYPINQPQG QQKPPITIKA HSGLTDGDTP LRSASPSTNN CPVFPSNFLN  780
RNQQPPTILL DDSIVDPSSN LVQELRTKPD LPIKHELPIS NRTEQPKYKG NGTDNLDATS  840
SATSYCLDAS GLQQNFSLPG FCLDGDVQSH SRNSMPSTAN IDALAPDALL SRGYDSGKDM  900
QNLFSNYGNS PRDIETELST AGINSQTFGV PDMSFKAGCS NDVTINEPGV LNGGLWPNQT  960
PRMRTYTKVQ KRGSVGRTID VTRYKGYEEL RQDLARMFGI EGQLEDPQRT EWKLVYVDHE  1020
NDILLVGDDP WDEFVSCVQS VKILSAAEVQ QMSLDGDLGP GPNQACSGTD SGALPEIPKN  1080
SGLHIHPLKC NGAIVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1744438050388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193987.10.0PREDICTED: auxin response factor 19-like
TrEMBLM4QSM60.0M4QSM6_CAMSI; Auxin response factor
STRINGXP_004157943.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19