PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000134.1_g00027.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 400aa MW: 44817.3 Da PI: 5.0566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000134.1_g00027.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.6e-51	31	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtdeelv +yL++++ gk++++ ++++e+d+yk+ePw+L + +k+++ ewyfFs+ d+ky +g+r nrat +gyWk Itr_sc000134.1_g00027.1 31 LAPGFRFHPTDEELVRYYLRRRACGKPFRF-QAVSEIDVYKSEPWELAEysYLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWK 115 579***********************99.88**********84346777888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v + k+++vg+kktLvf+ grap+g++t+Wvmheyrl Itr_sc000134.1_g00027.1 116 ATGKDRPVRH-KSQTVGMKKTLVFHCGRAPDGKRTNWVMHEYRL 158 ******.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-62	27	181	IPR003441	NAC domain
PROSITE profile	PS51005	57.658	31	181	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	33	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MMEQQPAQEG GALVVASPAP PKRTLAPPTS LAPGFRFHPT DEELVRYYLR RRACGKPFRF 60 QAVSEIDVYK SEPWELAEYS YLKTRDLEWY FFSPVDRKYG NGSRLNRATG KGYWKATGKD 120 RPVRHKSQTV GMKKTLVFHC GRAPDGKRTN WVMHEYRLTD NELVEAGVTQ DAFVLCRIFQ 180 KSALGPPNGD RYAPFVEEEW DDGKALVVPG GVAEDDVANG DDARVDGNDL DQGALCKAPE 240 SPVEPLSLSF VCKRERSEED PEPLSLAQSK RSKQDCPSSS HANGSEDSTT TSQDPPTMMM 300 TTNDSSPVLL EFPLLDPTEP RENQPTNAPT FDSSTLEKSV PPGYLKFISN LENEILNVSM 360 ERETLKIEVM RAQAMINILQ SRIDLLNKEN EDLRRVVRGG

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MMEQQPAQEG GALVVASPAP PKRTLAPPTS LAPGFRFHPT DEELVRYYLR RRACGKPFRF  60
QAVSEIDVYK SEPWELAEYS YLKTRDLEWY FFSPVDRKYG NGSRLNRATG KGYWKATGKD  120
RPVRHKSQTV GMKKTLVFHC GRAPDGKRTN WVMHEYRLTD NELVEAGVTQ DAFVLCRIFQ  180
KSALGPPNGD RYAPFVEEEW DDGKALVVPG GVAEDDVANG DDARVDGNDL DQGALCKAPE  240
SPVEPLSLSF VCKRERSEED PEPLSLAQSK RSKQDCPSSS HANGSEDSTT TSQDPPTMMM  300
TTNDSSPVLL EFPLLDPTEP RENQPTNAPT FDSSTLEKSV PPGYLKFISN LENEILNVSM  360
ERETLKIEVM RAQAMINILQ SRIDLLNKEN EDLRRVVRGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-52	30	183	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-52	30	183	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-52	30	183	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-52	30	183	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	30	183	19	170	NAC domain-containing protein 19
3swm_B	6e-52	30	183	19	170	NAC domain-containing protein 19
3swm_C	6e-52	30	183	19	170	NAC domain-containing protein 19
3swm_D	6e-52	30	183	19	170	NAC domain-containing protein 19
3swp_A	6e-52	30	183	19	170	NAC domain-containing protein 19
3swp_B	6e-52	30	183	19	170	NAC domain-containing protein 19
3swp_C	6e-52	30	183	19	170	NAC domain-containing protein 19
3swp_D	6e-52	30	183	19	170	NAC domain-containing protein 19
4dul_A	6e-52	30	183	16	167	NAC domain-containing protein 19
4dul_B	6e-52	30	183	16	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00612	ChIP-seq	Transfer from AT3G10490	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019194428.1	0.0	PREDICTED: NAC domain-containing protein 78-like isoform X2
Swissprot	Q9SQX9	1e-111	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A1J6KYG7	0.0	A0A1J6KYG7_NICAT; Nac domain-containing protein 78
STRING	XP_009619467.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-114	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]