PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000121.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 674aa MW: 78021.1 Da PI: 8.1899

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000121.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.2e-22	67	150	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YA+e+GF+vr+++s ++++ge + + ++Cs +g+++ ++ + r+r+etrtgC a++++++ ++++w+v ++ leHn Itr_sc000121.1_g00015.1 67 NYYNCYAREAGFRVRVKNSWFKRNSGEKYGAVLCCSSQGFKRIKDVN-----RSRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHN 147 69***************************************9988.....99****************************** PP FAR1 87 Hel 89 H l Itr_sc000121.1_g00015.1 148 HVL 150 *87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-20	67	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-27	269	362	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	556	592	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MVLQMEEVSP DSKHAIVGQN NEILRDTDGQ QIESCGIDGQ NGIPEVQKEF VAPAVGMEFE 60 SYDDAYNYYN CYAREAGFRV RVKNSWFKRN SGEKYGAVLC CSSQGFKRIK DVNRSRKETR 120 TGCPAMIRMR LVDSKRWRVL EVTLEHNHVL GAKLYKSMKK ISSGAKRKLE ANSNTEVQTI 180 KLYRALVIDT GGNGSTNSGA REARGSTDYS GHLNLRKGDT QAMYNYFCRM QLTNPNFFYM 240 MDLNDEGHLR NVFWVDARSR AACCYFSDVI YFDNTYLLNK FEIPLVAFVG INHHGQSVLL 300 GCGLLAGETM DSYIWVFKAW LTCTSGQIPQ TIITDRCKTL QSAVAEMFPR SVHCYDLSHI 360 MRKVPEKLGG LRNYDSIRKA FTKTIYETLK PIDFEAAWGF MIQRFEVGDH EWLRSLYDDR 420 SRWAPVYLKD TFFAGMATAR PTETLTAFFD RYLHKQTPLK EFLDKYELAL QKKHKEESIA 480 DMESRSSTHE LKTRCSFELQ LSKVYTREIF KKFQLEVEEM YSCFSTTQLH VDGPIIIFLV 540 KERVLGEWNR REIRDYEVLY NRAAVEVRCI CSCFNFYGYL CRHALCVLNF NGVEEIPSKY 600 ILPRWKKDYK RLCVPDPGSN PVNGTEQVQW FNQLYRSALQ VVEEGVISLD HYKAALQAFE 660 ESLSRVHSIE EKHK

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MVLQMEEVSP DSKHAIVGQN NEILRDTDGQ QIESCGIDGQ NGIPEVQKEF VAPAVGMEFE  60
SYDDAYNYYN CYAREAGFRV RVKNSWFKRN SGEKYGAVLC CSSQGFKRIK DVNRSRKETR  120
TGCPAMIRMR LVDSKRWRVL EVTLEHNHVL GAKLYKSMKK ISSGAKRKLE ANSNTEVQTI  180
KLYRALVIDT GGNGSTNSGA REARGSTDYS GHLNLRKGDT QAMYNYFCRM QLTNPNFFYM  240
MDLNDEGHLR NVFWVDARSR AACCYFSDVI YFDNTYLLNK FEIPLVAFVG INHHGQSVLL  300
GCGLLAGETM DSYIWVFKAW LTCTSGQIPQ TIITDRCKTL QSAVAEMFPR SVHCYDLSHI  360
MRKVPEKLGG LRNYDSIRKA FTKTIYETLK PIDFEAAWGF MIQRFEVGDH EWLRSLYDDR  420
SRWAPVYLKD TFFAGMATAR PTETLTAFFD RYLHKQTPLK EFLDKYELAL QKKHKEESIA  480
DMESRSSTHE LKTRCSFELQ LSKVYTREIF KKFQLEVEEM YSCFSTTQLH VDGPIIIFLV  540
KERVLGEWNR REIRDYEVLY NRAAVEVRCI CSCFNFYGYL CRHALCVLNF NGVEEIPSKY  600
ILPRWKKDYK RLCVPDPGSN PVNGTEQVQW FNQLYRSALQ VVEEGVISLD HYKAALQAFE  660
ESLSRVHSIE EKHK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167346.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	F6HXG3	0.0	F6HXG3_VITVI; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]