PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000116.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 429aa MW: 48123.4 Da PI: 7.4978

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000116.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.8	7.7e-38	80	188	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd LGfdk+sktieWL+ ++k aik+l++t+++++ + Itr_sc000116.1_g00007.1 80 PGKKDRHSKICTARGVRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLFSKSKNAIKDLMRTKNIKSAGF-------------- 151 69************************************************************77777222.............. PP TCP 88 gkaaksaakskksqksaasalnlakesrakarararertrekmri 132 s++++ + s kesr++arararert ek+++ Itr_sc000116.1_g00007.1 152 --------VSSSDEYEVGSITPATKESRQEARARARERTMEKKKK 188 ........45567778888889999**************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-36	81	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.472	82	140	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.896	168	185	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MFPTNHENPF PYPYDHPQNP QNPSSRHHDL DQQPPPFLLH DDSPLSQVFS QPPPPLAAGA 60 AAGDHKAKKG GGGPSRKRNP GKKDRHSKIC TARGVRDRRM RLSLQIARKF FDLQDTLGFD 120 KASKTIEWLF SKSKNAIKDL MRTKNIKSAG FVSSSDEYEV GSITPATKES RQEARARARE 180 RTMEKKKKMM IRGLENSSPS SLDQLGSSSN SPFLEESCCQ EIKSNNTCPD LAQSFSKQYL 240 GDEEIRSNNA CTDLAQWFSR QYLREEEIMS NNVCTDLAQW SGKQYLEEAE IMSNNTCTDL 300 AQSFSRQQYL RKEEIRSNNT CTDLAQRFSK RYSGEEEIRS NNAPLGFENQ FASSVGIKEN 360 YHQDNGESFM GFLGNWDLAG AGPGAGISPY THGLDPFPGI NPSTTLYFGA TSLPLDQERQ 420 FSCNHYSLG

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MFPTNHENPF PYPYDHPQNP QNPSSRHHDL DQQPPPFLLH DDSPLSQVFS QPPPPLAAGA  60
AAGDHKAKKG GGGPSRKRNP GKKDRHSKIC TARGVRDRRM RLSLQIARKF FDLQDTLGFD  120
KASKTIEWLF SKSKNAIKDL MRTKNIKSAG FVSSSDEYEV GSITPATKES RQEARARARE  180
RTMEKKKKMM IRGLENSSPS SLDQLGSSSN SPFLEESCCQ EIKSNNTCPD LAQSFSKQYL  240
GDEEIRSNNA CTDLAQWFSR QYLREEEIMS NNVCTDLAQW SGKQYLEEAE IMSNNTCTDL  300
AQSFSRQQYL RKEEIRSNNT CTDLAQRFSK RYSGEEEIRS NNAPLGFENQ FASSVGIKEN  360
YHQDNGESFM GFLGNWDLAG AGPGAGISPY THGLDPFPGI NPSTTLYFGA TSLPLDQERQ  420
FSCNHYSLG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165084.1	0.0	PREDICTED: uncharacterized protein LOC109161180
TrEMBL	A0A3Q7GNB6	1e-47	A0A3Q7GNB6_SOLLC; Uncharacterized protein
STRING	Solyc04g006980.1.1	2e-48	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	5e-29	TCP domain protein 12