PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000111.1_g00031.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 286aa MW: 31305.6 Da PI: 5.2961

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000111.1_g00031.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.6	2.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t+ ++ +v++ ++fdfl ++v + Itr_sc000111.1_g00031.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVSALHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.75E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	2.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVSALHLKHC VQSYNVFDFL REVVSKVPDY GHSDTGAEVS RRRKVAMDEN DSDDESKRSR 120 TETCPASSGG RGRGRGRGRG RGRRADREPV HHRDVESNSC ASIQQSCTQN PNPNPGMSKE 180 TCLESKEPLR QDPNATDDGD KSAVKSINPN ISLDESAEKP DTSSATATAT TTATAASCSS 240 LSVPPDVKDS EGTVLSEIDR MAVDPLHFAQ FNSTIVEEEE DYDDEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	141	RGRGRGRGRG
2	132	142	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185182.1	1e-145	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A484N485	1e-100	A0A484N485_9ASTE; Uncharacterized protein
STRING	XP_009780056.1	2e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-64	nuclear factor Y, subunit C11