PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000106.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 399aa    MW: 43312.4 Da    PI: 4.4408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000106.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15228263134
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++Cg+++  Tp +Rrgp g++tLCnaCGl ++ kg
  Itr_sc000106.1_g00007.1 228 CQHCGVSEngTPAMRRGPAGPRTLCNACGLVWANKG 263
                              ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.027159201IPR010402CCT domain
PfamPF062031.2E-15159201IPR010402CCT domain
SMARTSM004012.3E-10222275IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-11226279No hitNo description
Gene3DG3DSA:3.30.50.108.1E-15226269IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.669226279IPR000679Zinc finger, GATA-type
CDDcd002027.44E-15227274No hitNo description
PfamPF003202.0E-13228263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440228255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPAAAMEAGN LTSLQPRPYD VPCRREFANV PVGADEVSGR FEADDVSGGG CEEDMIGGTE  60
LVQVNSAAPP PACSVDGGGV ISSFPIRPSE LTQRKLPVFY VFPAVTPDKL QAVLLLLGGI  120
ETPENVPSME FQSQQCNKVL EDASPLAVCA STAPDVPRRI ASLMRFREKR KERCFEKKIR  180
YTCRKEVAQR MHRKNGQFAS MKESDKTSVD IFESRDGMPG SEPVLRSCQH CGVSENGTPA  240
MRRGPAGPRT LCNACGLVWA NKGILRDLSK GGKNIAFSKS DPGNPDIKLC TIESENSNQN  300
PDEEGSPNEM KPMLMGNENP FIGPADQDFR EAAENYTDGS PIGIGNSSIN PDEEVTELFD  360
PQETLDEFAN ASGSDFDIST SFDDEVDIHS HMGTDWPGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173186.10.0PREDICTED: GATA transcription factor 24-like isoform X2
TrEMBLA0A1S3X0101e-124A0A1S3X010_TOBAC; GATA transcription factor 19-like isoform X1
TrEMBLA0A1U8E7N21e-124A0A1U8E7N2_CAPAN; GATA transcription factor 19-like isoform X3
STRINGXP_009609384.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-44ZIM-like 1