PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000100.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 129aa    MW: 14788.7 Da    PI: 4.7168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000100.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.7e-19241061198
                              HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              l+++ l++p  f++eh + + ee   ++l+  + g +W vkl  +++ ++ +l++GWk+F ++n Lke++f++F++dg + f   v
  Itr_sc000100.1_g00015.1  24 LTTDFLRIPPCFVKEHlE-EDEE--SVVLKGdSGGGTWHVKL--ERNEDGLFLRQGWKDFHRDNSLKENEFLLFRYDGAMVF--SV 102
                              456779**********54.4445..4888884666*******..*********************************99999..88 PP

                              EEE- CS
                       B3  95 kvfr 98 
                              ++f+
  Itr_sc000100.1_g00015.1 103 RIFK 106
                              8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-258107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2310107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4814108IPR003340B3 DNA binding domain
CDDcd100173.22E-2014106No hitNo description
SMARTSM010195.0E-1816108IPR003340B3 DNA binding domain
PfamPF023625.4E-1625106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEKKESEEIT TEGPSFFQIV KAPLTTDFLR IPPCFVKEHL EEDEESVVLK GDSGGGTWHV  60
KLERNEDGLF LRQGWKDFHR DNSLKENEFL LFRYDGAMVF SVRIFKVTGL ERDVQQPLIP  120
PQTASSSQG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A200QJ562e-26A0A200QJ56_9MAGN; B3 DNA binding domain
STRINGAquca_009_00893.12e-24(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-17B3 family protein