PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000095.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 531aa MW: 56174.4 Da PI: 8.2469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000095.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000095.1_g00023.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	15.1	6.9e-05	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H + + Itr_sc000095.1_g00023.1 153 WKCEKCSKKYAVQSDLKAHSKIC 175 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.73E-7	76	99	No hit	No description
SMART	SM00355	0.017	77	99	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.6E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	77	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.4E-5	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.73E-7	148	173	No hit	No description
SMART	SM00355	61	153	173	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.683	153	181	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MFSGDCRHKE PQNYSIDMRT DADKNDSPGS GEASVSSSEH QAAPPPSKKK RNLPGMPDPD 60 AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC 120 PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDLKA HSKICGTKEY 180 RCDCGTLFSR RDSFITHRAF CDVLAEESAK AQEEVVVAPS CEEEPKAASP PPPPQSPPAQ 240 QPSPPPLPPP PPVVPPATTI ISSVPTVKTP ELPGSTNANP NPNPNPSGSM PKQVVEETTV 300 ITSLTGSCSS SSSSSSKVSG SVFASLFASS TAPGSLQPQT SGFTDLFRPM ATERVPEIGP 360 PLSTEPISLC LAMSHGSSIF GQERRQYAPA PQPAMSATAL LQKAAQMGAA SSNSSLLRGL 420 DIMSSTTSSS NPDHEFRGRQ LIDTDGASLT AGLGLGLPCD GGSGLKELML GTPSVFGPKY 480 PTLDLLGLGM AVNGSPTSGL SALMTSIGGN LDIAGSFGGS DFTGKDTGRS S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MFSGDCRHKE PQNYSIDMRT DADKNDSPGS GEASVSSSEH QAAPPPSKKK RNLPGMPDPD  60
AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC  120
PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDLKA HSKICGTKEY  180
RCDCGTLFSR RDSFITHRAF CDVLAEESAK AQEEVVVAPS CEEEPKAASP PPPPQSPPAQ  240
QPSPPPLPPP PPVVPPATTI ISSVPTVKTP ELPGSTNANP NPNPNPSGSM PKQVVEETTV  300
ITSLTGSCSS SSSSSSKVSG SVFASLFASS TAPGSLQPQT SGFTDLFRPM ATERVPEIGP  360
PLSTEPISLC LAMSHGSSIF GQERRQYAPA PQPAMSATAL LQKAAQMGAA SSNSSLLRGL  420
DIMSSTTSSS NPDHEFRGRQ LIDTDGASLT AGLGLGLPCD GGSGLKELML GTPSVFGPKY  480
PTLDLLGLGM AVNGSPTSGL SALMTSIGGN LDIAGSFGGS DFTGKDTGRS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-32	149	210	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-32	149	210	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182652.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-168	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A314L1J9	0.0	A0A314L1J9_NICAT; Protein indeterminate-domain 2
STRING	XP_009803272.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-137	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]