PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000090.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 369aa    MW: 39187.9 Da    PI: 5.4594
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000090.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36801803101
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              + k++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++  +++ +  + ++  
  Itr_sc000090.1_g00026.1  80 PPKRSSKDRHTKVEGRGRRVRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGELKIPTTSPAT 165
                              6799***********************************************************88888444312222222111111 PP

                      TCP  88 g.kaaksaakskksq 101
                              + +  ++a+k+++++
  Itr_sc000090.1_g00026.1 166 EnEGDSAATKRRRKR 180
                              111111111222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3084166IPR005333Transcription factor, TCP
PROSITE profilePS5136927.38985139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MASIDNRPQN FDVAADEEVN SPADPLLGDP NEFTITAVGP ASETASDSVP LLKEEPEEND  60
LQVALPLAGH MQVRTLEKPP PKRSSKDRHT KVEGRGRRVR MPAACAARIF QLTRELGHKS  120
DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGELKIPT TSPATENEGD SAATKRRRKR  180
GANSEFFDVN EPSNFAPVSP IAAQGLVPVW TVGSANGVVP TTAVPSGAFL MLPQPPSAAG  240
PSSQPQLWAI PATATPVFSV PGRPISNFVS AMQPGVCFPQ ARMTSSLSNG GDNSGKEVST  300
MAPSCSSTST TTATTTTTTT TTQMLRDFSL QIYDKKELQF MGASGSPSND HPQKPPPQTP  360
NQREEMTHQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1718941e-119GU171894.1 Ipomoea batatas microsatellite Stv_Ipb_1268 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200521.10.0PREDICTED: transcription factor TCP19
RefseqXP_019200522.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT891e-71TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A484LMP01e-163A0A484LMP0_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000623271e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.28e-69TCP family protein