PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000086.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 315aa MW: 34554.5 Da PI: 4.5931

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000086.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.8	1e-17	47	122	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++aded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl d+v + Itr_sc000086.1_g00010.1 47 YARIKKIMQADEDIGKIANAVPLLVSKALELFLQDLCDRTYDVTLKRGAKTLNSYHLKQCVQTCNVFDFLKDVVSK 122 59***********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.6E-17	48	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.6E-24	48	121	IPR009072	Histone-fold
SuperFamily	SSF47113	7.65E-20	54	124	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVIVEGKKAT EVPMMWAGLK RGISLEAQQS GTTLVSFLCI EMLNACYARI KKIMQADEDI 60 GKIANAVPLL VSKALELFLQ DLCDRTYDVT LKRGAKTLNS YHLKQCVQTC NVFDFLKDVV 120 SKVPDLGVSD GDDRSAAKRR KIAETDDHCS DDDIKRSDMH ETTPSSSSGR GRGRGRGRGR 180 GRGRAVDREQ TTLCEKLEDA ADPRDEKQKK RNSERLDSGS ETADSKVSLA GQSLEAPVRN 240 FDLNVDLNDE AGDSSAVPAE AAPSPSPTVP SVETKHEEEY PGWSDVEGMA IDPIQLANLN 300 RTTTDEVEED YDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-16	48	108	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	183	RGRGRGRGRGR
2	175	184	RGRGRGRGRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155582.1	1e-158	PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBL	A0A2R6PFD0	4e-87	A0A2R6PFD0_ACTCH; Dr1-associated corepressor like
STRING	XP_009607736.1	8e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-51	NF-YC family protein