PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000078.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27997.5 Da PI: 8.8063 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.8e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv++v+ +G g+W+++ar g++R +k+c++rw +yl Itr_sc000078.1_g00016.1 17 KGPWTAEEDRLLVEYVRFHGEGRWNSVARFAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +v++++++G++ W+tIar ++ gRt++++k++w+++ Itr_sc000078.1_g00016.1 70 RGQITPHEERVIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.099 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.423 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.80E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMGTEQMGWG IMGGWRKGPW TAEEDRLLVE YVRFHGEGRW NSVARFAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEERV IVELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAA 120 ANSSDHPKAR ILRQQQQQQQ QHKKKQEESN HQMDMRNMMS SFDEIDENSL SVPQPQAPTD 180 LLSDQEQGFL YSMINGYASV PEPSSTEDMI MCDGLWNLDD IHGSFSANKA CFLQPVAAPF 240 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 17 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180767.1 | 1e-148 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A498I8B2 | 1e-100 | A0A498I8B2_MALDO; Uncharacterized protein | ||||
STRING | XP_008366333.1 | 1e-101 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-78 | myb domain protein 305 |