PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000072.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 26200.3 Da PI: 9.1762 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.5 | 5.1e-13 | 70 | 155 | 1 | 78 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt dv + +rl+l+k+ +++ + + +++ +t ++++g+++e+ ++ + + + yvl +GWk+F ++ngL Itr_sc000072.1_g00018.1 70 FEKQLTATDVREDqNRLSLSKDEVKHSflpllndhE---RvcQGVPVTTYNPEGKEYEMMFKSWSTERVYVLNGGWKRFFRENGLV 152 89********99889*********655***997642...2347889**************************************** PP TT- CS B3 76 egD 78 eg Itr_sc000072.1_g00018.1 153 EGR 155 995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-16 | 70 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-7 | 70 | 166 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 70 | 155 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.64E-15 | 70 | 154 | No hit | No description |
SuperFamily | SSF101936 | 9.81E-17 | 70 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.854 | 71 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEEDDIAAAN ILIWMSEAIL EEREAIELEK IKMEMKMKVH SSVDGTPLPR FPPIPLLNGK 60 IDLSACSMPF EKQLTATDVR EDQNRLSLSK DEVKHSFLPL LNDHERVCQG VPVTTYNPEG 120 KEYEMMFKSW STERVYVLNG GWKRFFRENG LVEGRHWVTV WMFRHSQTRK LCFALTWKFI 180 PMDHPCTIKQ IRKFKGASNN ESIKAIDSHR VQKKAVKGRS RYKGD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019168886.1 | 1e-101 | PREDICTED: uncharacterized protein LOC109164795 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6430 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-31 | B3 family protein |