PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00072.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 220aa    MW: 24129.1 Da    PI: 5.8135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00072.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1670120255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr++  +g+++AeIrdp  +   +r +lg++ t eeAa a+++a+ +l+g
  Itr_sc000071.1_g00072.1  70 RYRGVRRRQ-WGKFAAEIRDPARG--GARRWLGTYETSEEAALAYDRAAFELRG 120
                              8*****887.**********8443..3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-2869128No hitNo description
PROSITE profilePS5103224.23670128IPR001471AP2/ERF domain
SMARTSM003803.2E-3270134IPR001471AP2/ERF domain
PfamPF008471.1E-1170120IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2270128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2870128IPR001471AP2/ERF domain
PRINTSPR003672.4E-127182IPR001471AP2/ERF domain
PRINTSPR003672.4E-12110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MELTAMASLE YDLAIFDSIN HLLHQQDLPE FMFSDNGFEG TGNEASSSLG DSGEAEATTE  60
VGVAPPEWKR YRGVRRRQWG KFAAEIRDPA RGGARRWLGT YETSEEAALA YDRAAFELRG  120
TKALLNFPGL AAAGIPEPVR VKRQKPKRRA ARPPSPSFEH GGGASKKRKV NVLNSLAAAT  180
AKLGSQTMLE MFQKDNSSVS IFDGFDAQVD VEECLCFPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2769128463ATERF1
3gcc_A2e-2769128463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146168KRRAARPPSPSFEHGGGASKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158801.11e-108PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404793e-34ERF2_TOBAC; Ethylene-responsive transcription factor 2
STRINGSolyc01g090310.2.12e-38(Solanum lycopersicum)
STRINGPGSC0003DMT4000914742e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-30ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]