PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000071.1_g00054.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 455aa MW: 49939.7 Da PI: 5.809

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000071.1_g00054.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	64	81	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F ++ ++ H Itr_sc000071.1_g00054.1 64 VCENCGKEFFSWKSFLEH 81 6*************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	280	63	83	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.53E-5	64	85	No hit	No description
SuperFamily	SSF57667	4.53E-5	188	215	No hit	No description
PROSITE profile	PS50157	10.221	193	220	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	193	215	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.0E-9	193	217	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.08E-5	266	292	No hit	No description
SMART	SM00355	0.52	269	291	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	269	291	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.9E-13	269	292	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	271	291	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MCGRALGGHM RAHGIGDDSA TMEDEDQASD WDEKMNDNNG GERTSFKRMY QLRANPNRLK 60 SVRVCENCGK EFFSWKSFLE HGKCSSDDAE SLVSDDGDED FGRKGAGWSK RKRSFRAAKL 120 GNFASNSSED EDIILAKCLI DLANARVEAA AEQEAESSAA AAAVFLAPLA AATRPRVDYK 180 AKGTASSSSK GLFECKACKK VFTSHQALGG HRASHKKVKG CYAAKQDQID DVIGGGDDDV 240 TTHDDFFPPS KTSSYLHQFE PSRRKSKDHE CSICHRVFST GQALGGHKRC HWITSAANSN 300 SNNSYSPETS TPKFHFHHQE QPKSLDLNLP AGDDITAAGG IIRRDPRNPF SFEVSTDIHL 360 RPFSMDNDRN HPYPPNNDDN NDYYNNDNNI IIDEHQKIAA ANVDDVYEDD EADSNNKVEL 420 AKLSGMKEMS SINKGSDSPW LQVGIGSTAE VGADS

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MCGRALGGHM RAHGIGDDSA TMEDEDQASD WDEKMNDNNG GERTSFKRMY QLRANPNRLK  60
SVRVCENCGK EFFSWKSFLE HGKCSSDDAE SLVSDDGDED FGRKGAGWSK RKRSFRAAKL  120
GNFASNSSED EDIILAKCLI DLANARVEAA AEQEAESSAA AAAVFLAPLA AATRPRVDYK  180
AKGTASSSSK GLFECKACKK VFTSHQALGG HRASHKKVKG CYAAKQDQID DVIGGGDDDV  240
TTHDDFFPPS KTSSYLHQFE PSRRKSKDHE CSICHRVFST GQALGGHKRC HWITSAANSN  300
SNNSYSPETS TPKFHFHHQE QPKSLDLNLP AGDDITAAGG IIRRDPRNPF SFEVSTDIHL  360
RPFSMDNDRN HPYPPNNDDN NDYYNNDNNI IIDEHQKIAA ANVDDVYEDD EADSNNKVEL  420
AKLSGMKEMS SINKGSDSPW LQVGIGSTAE VGADS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158800.1	0.0	PREDICTED: zinc finger protein ZAT4-like
TrEMBL	A0A328DPP4	1e-151	A0A328DPP4_9ASTE; Uncharacterized protein
STRING	XP_009785654.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1910	22	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	8e-28	C2H2-like zinc finger protein