PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000070.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 334aa    MW: 38231.4 Da    PI: 5.7884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000070.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.27.5e-41141201106
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeelv +yL+kk+++++++l +vi+++d+y++ePwdL+ k    ++e++ewyfFs++dkky+tg+r+nrat +g+W
  Itr_sc000070.1_g00008.1  14 VPPGFRFHPTDEELVGYYLRKKIASQRIDL-DVIRDIDLYRIEPWDLQyKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFW 98 
                              69****************************.9***************943432233667*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktL 106
                              katg+dk++++ k++ +g++ktL
  Itr_sc000070.1_g00008.1  99 KATGRDKAIYH-KSKIIGMRKTL 120
                              ***********.999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-437132IPR003441NAC domain
PROSITE profilePS5100536.44914165IPR003441NAC domain
PfamPF023652.4E-1915120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MIMADAVADE SCAVPPGFRF HPTDEELVGY YLRKKIASQR IDLDVIRDID LYRIEPWDLQ  60
YKCRIGYEEQ NEWYFFSHKD KKYPTGTRTN RATMAGFWKA TGRDKAIYHK SKIIGMRKTL  120
EEGWVVCRAF KKRMAGQARI NAETWESSRK PSNETSVIMD PVDYYIPTRQ TTPTTFISSH  180
NHHSFLRSKQ ELSSCNNLTD QFIHLPQLQS PSHPPPLQNP ATSPSVPPES YNKFHGSNIE  240
EDDENNNRVS DWRALDKLVA SQLNHDDNPD DDQKRHNGAG AGGEPRLKNQ DDSDVGLLLL  300
QSGGIWEDGE DDDINRFFSS NSDCNNIGIC LFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-3281209118Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182598.10.0PREDICTED: NAC domain-containing protein 105-like
SwissprotQ9SL411e-104NAC37_ARATH; NAC domain-containing protein 37
TrEMBLW6J8X01e-115W6J8X0_GOSHI; NAC domain protein NAC30
STRINGXP_009611974.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.18e-82vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]