PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000065.1_g00036.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 345aa MW: 39178.9 Da PI: 9.5071

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000065.1_g00036.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	149.4	2.3e-46	103	233	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl q+k+aikel t +s++++ + ss+s+ + + Itr_sc000065.1_g00036.1 103 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSQSKTAIKELKITAASKHNNGS--SSESECE---A 183 79************************************************************555553331..1122222...1 PP TCP 88 gkaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 + + +++ +s+ +++++++ +++kesr+karararert+ekm++k+++ Itr_sc000065.1_g00036.1 184 MSTMDENEeNSNTVESKNKKVCKKKKESREKARARARERTKEKMMTKTQN 233 22222233244444444444588899******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-41	103	229	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	37.199	105	163	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.397	209	226	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MFPTTKNPLP FSTETTTLLK RPFPFPFPFP WDHQNPSFNS QEEPPFFLQF PSPFLDDQIM 60 PLNQIFSHHP TGETAPLNSV KISSPTTKTK KKTLQGSTPR RRTGKKDRHS KICTAQGVRD 120 RRMRLSLQIA RKFFDLQDML GFDKASNTIE WLLSQSKTAI KELKITAASK HNNGSSSESE 180 CEAMSTMDEN EENSNTVESK NKKVCKKKKE SREKARARAR ERTKEKMMTK TQNLINPFPD 240 QESIANSYTQ ENTSSHEGIE THFASSLGIT EKYIFQYHDV HHNIINNAAP ISSEGTIDPT 300 NNTFMGFLGN WDPFSGNPSG SAYLGATNLH FQPMVQENNF SSNQY

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MFPTTKNPLP FSTETTTLLK RPFPFPFPFP WDHQNPSFNS QEEPPFFLQF PSPFLDDQIM  60
PLNQIFSHHP TGETAPLNSV KISSPTTKTK KKTLQGSTPR RRTGKKDRHS KICTAQGVRD  120
RRMRLSLQIA RKFFDLQDML GFDKASNTIE WLLSQSKTAI KELKITAASK HNNGSSSESE  180
CEAMSTMDEN EENSNTVESK NKKVCKKKKE SREKARARAR ERTKEKMMTK TQNLINPFPD  240
QESIANSYTQ ENTSSHEGIE THFASSLGIT EKYIFQYHDV HHNIINNAAP ISSEGTIDPT  300
NNTFMGFLGN WDPFSGNPSG SAYLGATNLH FQPMVQENNF SSNQY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180050.1	0.0	PREDICTED: transcription factor TCP12-like
TrEMBL	M1ABX2	6e-76	M1ABX2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400019324	1e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-33	TCP domain protein 12