PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000063.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 319aa    MW: 35821.3 Da    PI: 6.3476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000063.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14117168155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h e+Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Itr_sc000063.1_g00003.1 117 QRMTHIEVERNRRRQMNDYLAVLRSMMPPS---YAQRGDQASIVGGAINFVKELE 168
                              79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.44E-12115172No hitNo description
SuperFamilySSF474599.29E-16115178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-13116170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MALEAVVFQQ DPFSYGCRDF HGMEGWDCYG GFGFEDDDER KLNYCETFTE QVGSNGGYYC  60
WDYSSPPVSA ANTSSPEVCA AAGNVLSPVD PQAAAPVTRR KRRRAKCSKN KEEIENQRMT  120
HIEVERNRRR QMNDYLAVLR SMMPPSYAQR GDQASIVGGA INFVKELEQL SQFLEAHKLV  180
KNLPYNNANK TSTSSSSLPF STFFHFPQYS TSATRNHAAA SDKAAAEECS AVADIEVAMV  240
DDHANVKVLS RKRPKQLLKM VTWFHAMSLT ILHLNATTID HMVLYSFSLK VEEECRLSTV  300
KEIASSVHEM VAMIEQENQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
2117128RMTHIEVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185307.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7IQW01e-112A0A3Q7IQW0_SOLLC; Uncharacterized protein
STRINGSolyc11g010340.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]