PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000061.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 21828.9 Da PI: 6.2258 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C++ F++ L H++ H Itr_sc000061.1_g00021.1 32 YDCVYCKRGFNTAQALGGHMNIH 54 88*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.28E-6 | 30 | 59 | No hit | No description |
Pfam | PF13912 | 8.9E-6 | 32 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.803 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRQKMESIIN YSPENQEPER PEHDLAGIGR SYDCVYCKRG FNTAQALGGH MNIHRKDRAA 60 RNPKPNDNLN NDETSFNPNK PAGGRENNNN NFYTTLNVPM FFHHQVSAPP PSQMSYQTHF 120 PATTSGPVFS DHRYYRYNAL GCDDGDGNNN PQCLNLFEND WRLSLRHVDD VVEKIDDSVD 180 LELRLGHDYR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 8e-13 | C2H2 family protein |