PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000055.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28172.6 Da PI: 6.6201 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.2 | 6.6e-40 | 5 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrF Pt+eelv++yL++k++g + +++ vi+ v+iy++ P +Lp+ ++++++w++F++ +++ a+g ++nr t++g Itr_sc000055.1_g00009.1 5 LPLGFRFYPTEEELVSFYLRRKLQGATsADIDLVIPVVNIYHHSPCHLPQvageLSRGDSEQWFYFIPGEENRARGGKPNRLTRDG 90 699**********************995556556***************645633333666************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+ v+s+++e +g k+t+vf++grap g++t+W m+ey++ Itr_sc000055.1_g00009.1 91 YWKATGSPSFVYSSNNEIIGEKRTMVFHTGRAPGGTRTQWKMNEYKA 137 *********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-42 | 2 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.228 | 5 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-21 | 6 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMENLPLGFR FYPTEEELVS FYLRRKLQGA TSADIDLVIP VVNIYHHSPC HLPQVAGELS 60 RGDSEQWFYF IPGEENRARG GKPNRLTRDG YWKATGSPSF VYSSNNEIIG EKRTMVFHTG 120 RAPGGTRTQW KMNEYKAAAQ VVGGQGGASA SCDAIADLKL CHEFSLCRLY KKSKCDRSFD 180 RRPPEMAAAT GAGGGAPPPP PQHNHLPAAL MERSSSSSTA DDYATPPSAM EYQYYWDTCA 240 PLWDWEDLNI NLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-27 | 4 | 172 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-27 | 4 | 172 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-27 | 4 | 172 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-27 | 4 | 172 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-27 | 4 | 172 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-27 | 4 | 172 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-27 | 4 | 172 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193389.1 | 1e-161 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1U7YC31 | 2e-85 | A0A1U7YC31_NICSY; NAC domain-containing protein 90-like | ||||
STRING | XP_009801687.1 | 4e-86 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-67 | NAC domain containing protein 90 |