PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000054.1_g00042.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 691aa    MW: 74145 Da    PI: 7.1227
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000054.1_g00042.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093934301954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Itr_sc000054.1_g00042.1 393 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 430
                              664459******************************88 PP
2BELL114.36.4e-37261332172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +rq+lq+kkakLls+l+eV++rY+qy++q+q+++++Fe++ag+gsa++Yt+lAl++iS++FrcLk aia+qi
  Itr_sc000054.1_g00042.1 261 QRQDLQMKKAKLLSMLDEVEQRYRQYHHQMQVIVGAFEQAAGVGSARSYTHLALNTISKQFRCLKVAIASQI 332
                              699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-56181330IPR006563POX domain
PfamPF075262.7E-45187329IPR006563POX domain
PROSITE profilePS5007112.05371434IPR001356Homeobox domain
SMARTSM003894.2E-10374438IPR001356Homeobox domain
CDDcd000865.04E-13374434No hitNo description
SuperFamilySSF466893.25E-17375442IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-29377441IPR009057Homeodomain-like
PfamPF059202.7E-18391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MYYQGSSEVQ GDGLQTLYLM NPNYIGFSDT TALPQSQQAM FLNSGNALHV GGMAHARLPQ  60
SQHFVGVPLP ASALGSAQLH DPSRSLWAAV EQAGTGSGGG GQSHQQIPSA VVSGGGGTTD  120
FASQLGFHRS VVVSPTAQQG LSLSLSPQQQ PFRSLPMESP VGLLSARPGH DSGASSSSIT  180
NGISGLITGS KYLKAAQELL DEVVNVEKSL KLDAADKEKA KMKKESMPPF GAAGDPPTTG  240
AETSSQKTAA AAAAAELTTA QRQDLQMKKA KLLSMLDEVE QRYRQYHHQM QVIVGAFEQA  300
AGVGSARSYT HLALNTISKQ FRCLKVAIAS QIKATSKSLG EEEGVGGSRL KFIDHHLPQQ  360
RALQHLGMMQ PNAWRPQRGL PERAVSVLRA WLFEHFLHPY PKDSDKIMLA KQTGLTRSQV  420
SNWFINARVR LWKPMVEEMY MEEMKGQEQY GGSDENAAAA KRNEANKEIG SIEKHEKTSN  480
IIQDNNNNNA SPTEISTSIM TASPTGVSSL QPHGGAFSFI NTLNMETAGG ERNGKKPRTN  540
VDIQSSPSSI LSVDMDIKSA GDHKFTADRT PAAAENFPDL MAANPGGFGG FTIGDFGRFN  600
PENLTASGFH GNGVSLTLGL PPSENLAVSG PQQNYLSTHQ DMDLGRRLEM GRMGIDNNSQ  660
PSSHSNINGY ETIDFQNGKR FAAQLLPDFV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16380437158Homeobox protein Meis1
4xrs_B2e-16380437158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199359.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019199360.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019199361.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1S3X9F70.0A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1
STRINGXP_009629592.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-102BEL1-like homeodomain 1