PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000054.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 270aa MW: 30253.5 Da PI: 8.4606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.6 | 2.3e-44 | 7 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 pGfrF Pt+eelv++yL+ k+eg++ ++++vi+ ++iy++ePw+Lp+ ++++ ++w+fF++r++++a+g r+ r+t++gyW Itr_sc000054.1_g00015.1 7 SPGFRFYPTEEELVSFYLHTKLEGNRPDIDRVIPALNIYDLEPWQLPRvsgeLCAGDMEQWFFFVPRQEREARGGRPCRTTATGYW 92 69***************************99****************545643344677*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+kk++vfy+g+ap g+kt+W m+eyr+ Itr_sc000054.1_g00015.1 93 KATGSPSYVYSSGNKVIGVKKSMVFYNGKAPCGRKTKWKMNEYRA 137 *******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.729 | 6 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-47 | 6 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-23 | 8 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGAEIISPGF RFYPTEEELV SFYLHTKLEG NRPDIDRVIP ALNIYDLEPW QLPRVSGELC 60 AGDMEQWFFF VPRQEREARG GRPCRTTATG YWKATGSPSY VYSSGNKVIG VKKSMVFYNG 120 KAPCGRKTKW KMNEYRAIEE VVLPATSSST ATVPKLRHEM SLCRIYVISG SFRAFDRRPI 180 GAPPSLQRRE SGSGSSNINI NININDDDGK TLMELETSNK SSPPLLSASL MDQQCDGGRS 240 MKMESTTTNL NLCTMVKNLE PICHDWMGKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 6 | 166 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199158.1 | 1e-147 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 7e-82 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3Q7IZW1 | 1e-104 | A0A3Q7IZW1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068620.1.1 | 1e-105 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-84 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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