PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000053.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 27904.2 Da PI: 7.7151 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 7 | 28 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C k F + L H+r+H Itr_sc000053.1_g00017.1 7 KCKLCWKEFANGKALGGHMRSH 28 7********************9 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk F + L H r+H Itr_sc000053.1_g00017.1 175 HECPFCGKIFGSGQALGGHKRSH 197 79**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.951 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.1E-7 | 7 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-8 | 122 | 197 | No hit | No description |
PROSITE profile | PS50157 | 9.286 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.0E-4 | 123 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 173 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 175 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.034 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-10 | 175 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAMEMQKCKL CWKEFANGKA LGGHMRSHLA PLPLPPPKTP PENQYSGGVD PTRKPTQGRS 60 KRARRLFVSE ENEKSSDQGA KNEEAETVTE ENIAMCLLML SDDVRGDSGT IKQRKTSKDK 120 ENFRCEICNG VFKCSQALGS HRTAHRNKTM NAGAGGFDRE KLRNLGGENG GKRLHECPFC 180 GKIFGSGQAL GGHKRSHSSS GSAGSGSCSS KLDESLMVDS NPDYDDVLNT MIDLNFPAPV 240 EEDNRDLSQP QLSVDS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156008.1 | 1e-92 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A328E9Q1 | 2e-47 | A0A328E9Q1_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 3e-32 | C2H2-like zinc finger protein |